View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_16 (Length: 297)
Name: NF11085_low_16
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 52000937 - 52000652
Alignment:
| Q |
1 |
ctacaacttgaccaatgtggacgagttattactaaattcaaccgtcaaccaaaactcaggattatgcatatatagcagagctaaccatgcatccctacaa |
100 |
Q |
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| T |
52000937 |
ctacaacttgaccaatgtggacgagttattactaaattcaaccgtcaaccaaaacttaggattatgcatatatagcagagctaaccatgcatccctacaa |
52000838 |
T |
|
| Q |
101 |
ctattacttgtaattaggtagcatcaaaaactaaaacgaataatcaaattccaccaagttttctctgtttgattaagaatgactcgtctgttttggaatt |
200 |
Q |
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| T |
52000837 |
ctattacttgtaattaggtagcatcaaaaactaaaacgaataatcaaattccaccaagttttctctgtttgattaagaatgactcgtctgttttggaatt |
52000738 |
T |
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| Q |
201 |
ggacgaatatttagattcttatttttccaccaatatctgtcaagtctaccaggcttaccatcattgttatttccactagaatctgt |
286 |
Q |
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| T |
52000737 |
ggacgaatatttagattcttatttttccaccaatatctgtcaagttgaccaggcttaccatcattgttatttccactagaatctgt |
52000652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 51998818 - 51999070
Alignment:
| Q |
31 |
actaaattcaaccgtcaaccaaaactcaggattatgcatatatagcagagctaaccatgcatccctacaactattacttgtaattaggtagcatcaaaaa |
130 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||||| || ||||||||||| |
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| T |
51998818 |
actaaattcaaccatcaaccaaaactaaggattatgcatatatagcacagccaaccatgtatctctacaactattacatgtaattgggcagcatcaaaaa |
51998917 |
T |
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| Q |
131 |
ctaaaacgaataatcaaattccaccaagttttctctgtttgattaagaatgactcgtctgttttggaattggacgaatatttagattcttatttttccac |
230 |
Q |
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| T |
51998918 |
ctaaaaggagtaatcgattttcaccaagatttctctgtttgattaagaatgccccatatgttttgaaattggacggatatttagattccaattgtt-cac |
51999016 |
T |
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| Q |
231 |
caatatctgtcaagtctaccaggcttaccat-cattgttatttccactagaatc |
283 |
Q |
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||||||||| ||||| |||||| ||||| | ||| || |||||||||||||| |
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| T |
51999017 |
caatatctgccaagttgaccaggattaccttccatgcttttttccactagaatc |
51999070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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