View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11085_low_17 (Length: 286)
Name: NF11085_low_17
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_17 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0189 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 19334 - 19600
Alignment:
| Q |
1 |
gatatttctgctgaaatttgtcctaatgaagatgtagttgatgttgatacatcaatacaatttaagaatatacctgattcttttgtcaatcttcccgcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
19334 |
gatatttctgctgaaatttgtcctaatgaagatgtagttgatgttgatacatcaatacaatttaagaatataccagattcttttgttaatctttccgcca |
19433 |
T |
|
| Q |
101 |
actcatacccacttgtgataacatttcagaagtttctaatgatgcttgatgggactgtggggaattcnnnnnnngaaaggtttagtgatctatcttctct |
200 |
Q |
| |
|
||| ||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| | |
|
|
| T |
19434 |
acttatatccacttgtgataacattccataagtttctaatgatgcttgatggaactgtggggaattccttttttgaaaggtttagtgatcaatcttcttt |
19533 |
T |
|
| Q |
201 |
aagcgagaaccttggtgtaagatctgttgtcttggagacttttataaggaagaaggaggtgacttat |
267 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19534 |
aagtgagaaccttggtgtaagatctgttgctttggagacttttataaggaagaaggaagtgacttat |
19600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 35 - 267
Target Start/End: Complemental strand, 34604510 - 34604278
Alignment:
| Q |
35 |
tagttgatgttgatacatcaatacaatttaagaatatacctgattcttttgtcaatcttcccgccaactcatacccacttgtgataacatttcagaagtt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34604510 |
tagttgatgttgatacatcaatacaatttaggaataaacctgattcttttgtcaatcttgccgccaactcatatccacttgtgataacatttcagaagtt |
34604411 |
T |
|
| Q |
135 |
tctaatgatgcttgatgggactgtggggaattcnnnnnnngaaaggtttagtgatctatcttctctaagcgagaaccttggtgtaagatctgttgtcttg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
34604410 |
tctaatgatgcttgatgggactgtggggaattctttttttgaaagatttagtgatctatcttctctacgtgagaaccttggtgtaagatctgttgtcttg |
34604311 |
T |
|
| Q |
235 |
gagacttttataaggaagaaggaggtgacttat |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34604310 |
gagacttttataaggaagaaggaggtgacttat |
34604278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University