View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11085_low_2 (Length: 862)
Name: NF11085_low_2
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_2 |
 |  |
|
| [»] scaffold0019 (2 HSPs) |
 |  |  |
|
| [»] scaffold0196 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 734; Significance: 0; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 19 - 853
Target Start/End: Complemental strand, 11666429 - 11665595
Alignment:
| Q |
19 |
gagatatctataccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaa |
118 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
11666429 |
gagatgtctatgccatcaactacgacttttccttcggttggttccacaagacgaaataaagcactgataagagtggatttcccactgcctgttcttccaa |
11666330 |
T |
 |
| Q |
119 |
caataccaatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11666329 |
caataccaatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaaca |
11666230 |
T |
 |
| Q |
219 |
aattatgtacggtatttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttg |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11666229 |
aattatgtacgctatttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttg |
11666130 |
T |
 |
| Q |
319 |
cctgcaactggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatatta |
418 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11666129 |
cctgcaactggccaattcaaaggaggatgatttccttctacaatttctttagcctcactttgtatatgcatatattgatttagcctctctactgatatta |
11666030 |
T |
 |
| Q |
419 |
tatgatttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctggaatgaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||| |
|
|
| T |
11666029 |
tatgatttgcaagagtgcattgaatttgagttgtatataccaaggaagcatttagtgtaagaccataagacaaagccatgccgatatatcctggaatgaa |
11665930 |
T |
 |
| Q |
519 |
ggaaattgaaatttagttatttgcataacgagagttgaagatattttttgaggatagnnnnnnntaattagaatataattataatacagaaacaatgaca |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11665929 |
ggaaattgaaatttagttatttgcataacgagagttgaagatattttttgaggatagaaaaaaataattagaatataattataatacagaaacaatgaca |
11665830 |
T |
 |
| Q |
619 |
tttcggatattcaaataagcaaattctcaccggaactgaaagtccccgacggaagcataaccatgcaaagcgctgtagtggcaagaagacttgcacctat |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11665829 |
tttcggatattcaaataagcaaattctcaccggaactgaaagtccccgatggaagcataaccatgcaaagcgctgtagtggcaagaagacttgcacctat |
11665730 |
T |
 |
| Q |
719 |
tgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcga |
818 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11665729 |
tgtttctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcga |
11665630 |
T |
 |
| Q |
819 |
tattcctcctcaaaagctcttattgtctctgctcc |
853 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
11665629 |
tcttcctcctcaaaagctcttattgtcactgctcc |
11665595 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 853
Target Start/End: Original strand, 11707107 - 11707939
Alignment:
| Q |
19 |
gagatatctataccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaa |
118 |
Q |
| |
|
||||| ||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
|
|
| T |
11707107 |
gagatgtctatgccatcaaccataatgtttcctcctgttggttccacaagacgaaataaagcactaataagagtggatttcccgctgcctgttcttccga |
11707206 |
T |
 |
| Q |
119 |
caataccaatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||| | | || |||| | |
|
|
| T |
11707207 |
caataccaatcttgtgacctgcttcaaatgtgcatgtgataccatgaagtacaagtggtccgtcaggcctgtatcgtatctaacatagcatgaacaaaaa |
11707306 |
T |
 |
| Q |
219 |
aattatgtacggta-tttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgacttt |
317 |
Q |
| |
|
|||||||| || || ||| | || | |||||||| ||||||||| || |||||| ||||||| || ||||||||||| |||| |||||| ||||| |
|
|
| T |
11707307 |
aattatgt-cgttaatttgagctgc-attttttcgtaacattatgctttgcattttgaaaataa-gtaacaattaccttcaagtcatttatttctacttt |
11707403 |
T |
 |
| Q |
318 |
gcctgcaactggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatatt |
417 |
Q |
| |
|
|||||||| |||||| ||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
11707404 |
gcctgcaattggccagttcaaaggagggcgatttccttctacgatttctttggcctcactttgtatatgcatatattgatctagcctctcaactgatatt |
11707503 |
T |
 |
| Q |
418 |
atatgatttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctggaatga |
517 |
Q |
| |
|
|| ||||||||||||||||| ||| |||| ||| || ||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11707504 |
atctgatttgcaagagtgcactgacattgaattgaatttactaagtaagaatttagtgcaaggccataagatagagccatgccaataaatcctggaatga |
11707603 |
T |
 |
| Q |
518 |
aggaaattgaaatttagttatttgcataacgagagttgaagatattttttgaggatagnnnnnnntaattagaatataattataatacagaaacaatgac |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11707604 |
aggaaattgaaatttagttatttgcataacgagagttgatgatagtttttgaagatagaagaaaataattagaatataattataataccgaaacaatgac |
11707703 |
T |
 |
| Q |
618 |
atttcggatattcaaataagcaaattctcaccggaactgaaagtccccgacggaagcataaccatgcaaagcgctgtagtggcaagaagacttgcaccta |
717 |
Q |
| |
|
||||||||| || ||||||||||||||||||| || |||||||||| || ||||| |||||||||||||| |||| || |||||||| || |||||| | |
|
|
| T |
11707704 |
atttcggatgttaaaataagcaaattctcaccagaggtgaaagtccctgatggaagtataaccatgcaaagtgctgcagaggcaagaacacctgcaccaa |
11707803 |
T |
 |
| Q |
718 |
ttgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcg |
817 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || || |
|
|
| T |
11707804 |
ttgtttctaaccgttggatcaaccactcgtttgaggcaaaattatgaaaaaatgcactagcattaatgtcaattagatcaagattcttctgaaagaaacg |
11707903 |
T |
 |
| Q |
818 |
atattcctcctcaaaagctcttattgtctctgctcc |
853 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
11707904 |
atcttcctcctcaaaagcccttattgtcactgctcc |
11707939 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 25 - 520
Target Start/End: Original strand, 11670742 - 11671235
Alignment:
| Q |
25 |
tctataccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaatac |
124 |
Q |
| |
|
||||| ||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || |||| |
|
|
| T |
11670742 |
tctattccatcgactataatttttcctcctgctggttccacaagacgaaataaagcactgataagagtggatttcccgctgcctgttcttccgacgatac |
11670841 |
T |
 |
| Q |
125 |
caatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaacaaattat |
224 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| || |||| ||||||| || ||||| ||||| |
|
|
| T |
11670842 |
caatcttgtgccctgctttgaatgtgcatgtgatcccgtgaagtactagtggtccgtcaggtctgtaacgaatctgacatggtatgaacaaactcattat |
11670941 |
T |
 |
| Q |
225 |
gtacggtatttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttgcctgca |
324 |
Q |
| |
|
|| |||| | || | ||||| |||||| || |||| ||||||||| ||||||| || || |||||||| |||| |||||| |||||||| ||| |
|
|
| T |
11670942 |
gtggttcatttaagctgc-attttctctgaatatcatgtgtcacattttgaaaataa-gtaaaaactaccttcaagtcatttatttctactttgccagca |
11671039 |
T |
 |
| Q |
325 |
actggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatattatatgat |
424 |
Q |
| |
|
|||||||||||| |||||| || |||| ||||||| ||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
11671040 |
actggccaattcgaaggagaacgattttcttctactatttcttccgcttcactttctatatgcatatattgatttagcctctctactgatattatgttat |
11671139 |
T |
 |
| Q |
425 |
ttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctggaatgaagg |
520 |
Q |
| |
|
||||||||||||||||| ||||| ||| | ||| ||||| | | ||||||| ||| ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
11671140 |
ttgcaagagtgcattgattttgaattgaaaatattaaggcaccgtttagtgaaaggccataagttagagccatgccaataattcctggaatgaagg |
11671235 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 306 - 844
Target Start/End: Original strand, 11629115 - 11629651
Alignment:
| Q |
306 |
tatttcgactttgcctgcaactggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctc |
405 |
Q |
| |
|
|||||| |||||||| ||||||||||||| | ||||||||| ||| ||||||| |||||||| |||||||||| ||||||||| ||||| |||| |||| |
|
|
| T |
11629115 |
tatttctactttgccggcaactggccaatacgaaggaggacggttttcttctactatttctttcgcctcactttctatatgcatgtattgttttagcctc |
11629214 |
T |
 |
| Q |
406 |
tctactgatattatatgatttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataa |
505 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||| ||||| ||| | ||||||||||| |||| || ||| |||||||||||||||||||| |||| |
|
|
| T |
11629215 |
tctactgatattatgtgattagcaacagtgcattgattttgaattgaaaatactaaggaattgtttaatgaaaggccataagatagagccatgccgataa |
11629314 |
T |
 |
| Q |
506 |
atcctggaatgaaggaaattgaaatttagttatttgcataacgagagttgaagatattttttgaggatagnnnnnnntaattagaatataattataatac |
605 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||||| | || || | | | |||| ||| || ||| | ||| || |||||||| ||||| |
|
|
| T |
11629315 |
ttcctggaatgaaagatgttgaaatttagaaacttgcatcaagaaagataatgttattgttttagcata--aaaaaatgatttgagtataattacaatac |
11629412 |
T |
 |
| Q |
606 |
agaaacaatgacat-ttcg-gatattcaaataagcaaattctcaccggaactgaaagtccccgacggaagcataaccatgcaaagcgctgtagtggcaag |
703 |
Q |
| |
|
| |||| || || |||| |||||| || || |||||||||||| || |||| || || | |||||||||||||||||||| |||| || | || |
|
|
| T |
11629413 |
tcagacaacgatatcttcgagatatt--aacaaccaaattctcacctgaggtgaatgttccagggggaagcataaccatgcaaagtgctgcagcagtgag |
11629510 |
T |
 |
| Q |
704 |
aagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattc |
803 |
Q |
| |
|
|||| ||||| ||||| ||||||||| |||||||||||||||| ||||||||| |||| ||||| ||||| |||||| | || ||||||||||| ||| |
|
|
| T |
11629511 |
aagaactgcactgattgtttctaaccgttggatcaaccactcattcgaggcaaaactatggaaaaaagcacttgcattattatcaattagatcaaggttc |
11629610 |
T |
 |
| Q |
804 |
ttctcaaaaaagcgatattcctcctcaaaagctcttattgt |
844 |
Q |
| |
|
||||||||| | |||| ||||||||||||||| || ||||| |
|
|
| T |
11629611 |
ttctcaaaagaacgatcttcctcctcaaaagccctaattgt |
11629651 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 11628836 - 11629010
Alignment:
| Q |
25 |
tctataccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaatac |
124 |
Q |
| |
|
||||| ||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
11628836 |
tctattccatcaactataattttgcctcctgctggttccacaagacgaaataaagcactgataagagtggatttcccactgcctgttcttccgacgatac |
11628935 |
T |
 |
| Q |
125 |
caatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatct |
199 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
11628936 |
caatcttatgccctgcttcaaatgtgcatgtgatcccatgaagtacaagtggtccattagacctgtatcgtatct |
11629010 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 288 - 521
Target Start/End: Complemental strand, 11621316 - 11621083
Alignment:
| Q |
288 |
aattaccttcaggtcacatatttcgactttgcctgcaactggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgc |
387 |
Q |
| |
|
||||||||||| || | |||||| |||| || ||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
11621316 |
aattaccttcaagttatttatttctacttctccagcaactggccaattcaaaggaggacgatttccttctataatttcttcggcctcgctttgtatatgc |
11621217 |
T |
 |
| Q |
388 |
atatattgatttaacctctctactgatattatatgatttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataag |
487 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||| ||| | ||| ||||| | | ||||||| || ||||||| |
|
|
| T |
11621216 |
atatattgatttagcctctctactgatattatgtgattagcaagagtgcattgattttgaattgcaaatattaaggcaccgtttagtgataggccataag |
11621117 |
T |
 |
| Q |
488 |
atagagccatgccaataaatcctggaatgaagga |
521 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
11621116 |
ttagagccatgccaataattcctggaatgaagga |
11621083 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 11621688 - 11621485
Alignment:
| Q |
19 |
gagatatctataccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaa |
118 |
Q |
| |
|
||||||||||| |||||||||| || |||||| ||| |||||||||||| ||||||||||||| |||||||| || ||||||||||||||||| |||| |
|
|
| T |
11621688 |
gagatatctatgccatcaactacaatttttccacctgctggttccacaaggcgaaataaagcaccgataagagtggacttcccactgcctgttctgccaa |
11621589 |
T |
 |
| Q |
119 |
caataccaatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||| || | || |||||||||| | |||||| || |||||| |
|
|
| T |
11621588 |
caataccaatcttgtgacctgctttaaatgtacatgtgatgccatgaagtacaagtggtccgccatgtctatatcgtatctggtatggtatgaacaaaca |
11621489 |
T |
 |
| Q |
219 |
aatt |
222 |
Q |
| |
|
|||| |
|
|
| T |
11621488 |
aatt |
11621485 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 25 - 513
Target Start/End: Original strand, 12090050 - 12090536
Alignment:
| Q |
25 |
tctataccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaatac |
124 |
Q |
| |
|
||||| ||||| ||||||| ||| ||| | || || |||||||||||||| ||||||| ||| ||||| ||||| || ||||| ||||| || ||||||| |
|
|
| T |
12090050 |
tctattccatcgactataattttgcctcccgtcggctccacaagacgaaacaaagcaccaatcagagttgattttccgctgccagttctaccgacaatac |
12090149 |
T |
 |
| Q |
125 |
caatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaacaaattat |
224 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| |||| || || |||||||||||| ||| |||||||||| |||||| | || || | |||| ||||||| |
|
|
| T |
12090150 |
caatcttgtgccctccttcaaaggtgcaattgataccatgtagtacaagtggtgcattaggcctgtattgtatctggaattatataaacaaagaaattat |
12090249 |
T |
 |
| Q |
225 |
gtacggtatttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttgcctgca |
324 |
Q |
| |
|
| |||||| ||| ||||||||||||||| || | |||||||||||||||| | | | ||||||||||| ||| |||||| ||||| || || |
|
|
| T |
12090250 |
-aatttcatttcatctcacattttttctgaacaatacgattcacatttttaaaat-attttcgaattaccttcaagtcttttatttcaacttttccgaca |
12090347 |
T |
 |
| Q |
325 |
actggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatattatatgat |
424 |
Q |
| |
|
|||||||||| | |||||| ||||||||| | ||||| ||||||||| ||||||| |||||||||| ||| |||||||||| ||||| || |
|
|
| T |
12090348 |
tctggccaattgattggaggatgatttccttcactcacttcttgggcctcacttggtatatgagagtattgatttatcctttctactgatactatataat |
12090447 |
T |
 |
| Q |
425 |
ttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctgga |
513 |
Q |
| |
|
|| | ||| ||||| | |||||| |||||||||||| | |||| || ||| |||||||| || ||||| |||||||| |||||| |
|
|
| T |
12090448 |
tttctagaatgcatcggtattgagtgctatatactaaggcactgtttaatgcaaggccataagaaagggccataccaataaaacctgga |
12090536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 11736441 - 11736579
Alignment:
| Q |
61 |
tccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaataccaatcttgtgacctgcttcaaatgtgcatgtgatcc |
160 |
Q |
| |
|
|||||||| ||||| ||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||| ||| |||| |||||||| | || | |
|
|
| T |
11736441 |
tccacaagtcgaaacaaagcacctatcagagttgatttcccgctgcccgttcttccaacaataccaatcttgtgtcctccttcgaatgtgcaatttatac |
11736540 |
T |
 |
| Q |
161 |
cgtgaagtacaagtggtccatcaggcctgtatcgtatct |
199 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11736541 |
catgaagtacaagtggtccagtaggcctgtatcgtatct |
11736579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 61 - 513
Target Start/End: Complemental strand, 11759337 - 11758886
Alignment:
| Q |
61 |
tccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaataccaatcttgtgacctgcttcaaatgtgcatgtgatcc |
160 |
Q |
| |
|
|||||||||||||| ||||||| || || |||||||| || ||||| ||||| || ||||||||||||||||| ||| ||||||| |||| |||| | |
|
|
| T |
11759337 |
tccacaagacgaaacaaagcacctatcagtgtagattttccgctgccagttctaccgacaataccaatcttgtgccctccttcaaagatgcaattgatac |
11759238 |
T |
 |
| Q |
161 |
cgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaacaaattatgtacggtatttcaactcccattttttctgaacatta |
260 |
Q |
| |
|
| || |||||||| ||| ||| |||||| ||| |||||| | || || | |||| |||||||||| ||||||| ||| || |||||||||||| || |
|
|
| T |
11759237 |
catgtagtacaagaggtgcattaggcctatattgtatctggaattatataagcaaataaattatgtattttatttcatctcacaatttttctgaacaata |
11759138 |
T |
 |
| Q |
261 |
tgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttgcctgcaactggccaattcaaaggaggacaatttccttctaca |
360 |
Q |
| |
|
|| |||||||||| ||||| || | ||||||||||| ||| |||||| ||||| || || |||||||||| | |||||| ||||||||| |
|
|
| T |
11759137 |
tgattcacattttaaaaat-aattttgaattaccttcaagtcttttatttcaacttttccaacatctggccaattgattggaggatgatttccttcactc |
11759039 |
T |
 |
| Q |
361 |
atttctttagcctcactttgtatatgcatatattgatttaacctctctactgatattatatgatttgcaagagtgcattgaatttgagttgtatatacta |
460 |
Q |
| |
|
| ||||| ||||||||| ||||||| |||||||||| ||| |||||||||| ||||| |||| | ||| ||||||| |||| | |||||||||| |
|
|
| T |
11759038 |
acttcttgggcctcacttggtatatgagagtattgatttatcctttctactgatactatataattttcgagaatgcattggtattgaatggtatatacta |
11758939 |
T |
 |
| Q |
461 |
aggaagcatttagtgtaagaccataagatagagccatgccaataaatcctgga |
513 |
Q |
| |
|
||| | |||| || || |||||||| || ||||| |||||||| |||||| |
|
|
| T |
11758938 |
aggcactgtttaatgaaaagccataagaaagggccataccaataaaacctgga |
11758886 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 669 - 844
Target Start/End: Complemental strand, 11620936 - 11620761
Alignment:
| Q |
669 |
ggaagcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaa |
768 |
Q |
| |
|
|||||||||||||||||||| | || || ||| |||| | ||||| | ||| ||||| ||| |||||||||| || |||||||||||| ||||||||| |
|
|
| T |
11620936 |
ggaagcataaccatgcaaagtgttgcagcggcgagaacaactgcactgagtgtttctaatcgttggatcaaccattcgtttgaggcaaaactatgaaaaa |
11620837 |
T |
 |
| Q |
769 |
atgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttattgt |
844 |
Q |
| |
|
| ||||| |||||| | || ||||||||||| |||||||||||| | |||| |||| |||||||||| |||||||| |
|
|
| T |
11620836 |
aagcacttgcattattatcaattagatcaaggttcttctcaaaagaacgatcttccccctcaaaagcccttattgt |
11620761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 717 - 845
Target Start/End: Original strand, 11671435 - 11671563
Alignment:
| Q |
717 |
attgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagc |
816 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| |||||| |||| ||||| ||||||||||| | || |||||| ||| |||||||||||| | |
|
|
| T |
11671435 |
attgtttctaaccgttggatcaaccactcatttgaagcaaaactatggaaaaaagcactagcatttaaatcaattagacaaaggttcttctcaaaagaat |
11671534 |
T |
 |
| Q |
817 |
gatattcctcctcaaaagctcttattgtc |
845 |
Q |
| |
|
|| ||||||| |||||| ||||||||| |
|
|
| T |
11671535 |
gagcctcctccttaaaagcccttattgtc |
11671563 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 306 - 485
Target Start/End: Original strand, 11736687 - 11736866
Alignment:
| Q |
306 |
tatttcgactttgcctgcaactggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctc |
405 |
Q |
| |
|
|||||| |||||||||||| |||||||||| | ||||||| ||||||||| | | || || ||||||||| ||||||| | |||||||||| |||| |
|
|
| T |
11736687 |
tatttctactttgcctgcagctggccaattaaccggaggacgatttccttcaatcacttgttgggcctcacttggtatatgagtgtattgatttatcctc |
11736786 |
T |
 |
| Q |
406 |
tctactgatattatatgatttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccata |
485 |
Q |
| |
|
|| | |||| ||||| |||||| | | ||||||| ||||| ||| |||||||||||| ||||||||| ||| ||||| |
|
|
| T |
11736787 |
tcaatagatactatataatttgctacaatgcattggctttgaattgagtatactaaggaaccatttagtgaaaggccata |
11736866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 723 - 845
Target Start/End: Original strand, 12090709 - 12090831
Alignment:
| Q |
723 |
tctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatatt |
822 |
Q |
| |
|
|||| |||| |||||| ||| ||||||||||||||| |||| || || ||| ||||||| | || |||| |||||||||||| | ||||| |||| || |
|
|
| T |
12090709 |
tctacccgttggatcagccattcatttgaggcaaaactatggaagaaagcagtagcattgacatcaattaaatcaagattcttgttgaaaaaccgatctt |
12090808 |
T |
 |
| Q |
823 |
cctcctcaaaagctcttattgtc |
845 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
12090809 |
cttcctcaaaagctcttattgtc |
12090831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 733 - 845
Target Start/End: Complemental strand, 11758707 - 11758595
Alignment:
| Q |
733 |
ggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaa |
832 |
Q |
| |
|
||||||||||||||||||||| |||| | || || || ||||||||||| | || |||| |||||||||||| | ||||| || | ||| |||||||| |
|
|
| T |
11758707 |
ggatcaaccactcatttgaggaaaaactgtggaagaaagcactagcattgacatcaattaaatcaagattcttgttgaaaaaacggtcttcttcctcaaa |
11758608 |
T |
 |
| Q |
833 |
agctcttattgtc |
845 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
11758607 |
agcccttattgtc |
11758595 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 844
Target Start/End: Original strand, 11737186 - 11737307
Alignment:
| Q |
723 |
tctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatatt |
822 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||||| | || || || ||||| ||||| | || |||| || ||||||||| | ||||| |||| || |
|
|
| T |
11737186 |
tctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatctt |
11737285 |
T |
 |
| Q |
823 |
cctcctcaaaagctcttattgt |
844 |
Q |
| |
|
| ||||| ||||| |||||||| |
|
|
| T |
11737286 |
cttcctcgaaagcccttattgt |
11737307 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 31 - 516
Target Start/End: Original strand, 16390356 - 16390839
Alignment:
| Q |
31 |
ccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaataccaatct |
130 |
Q |
| |
|
||||||| ||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
16390356 |
ccatcaattataatgtttcctcctgatggttccacaagacgaaataaagcactaataagagtggattttccgctgcctgttcttccgacaataccaatct |
16390455 |
T |
 |
| Q |
131 |
tgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaacaaattatgtacgg |
230 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||| | ||||||||||| | |
|
|
| T |
16390456 |
tgtgacctacttcgaatgtgcatgtgatcccatgaagtacaagtggtccgtcaggcctgtatcgtatctaacatagtaaaaataaacaaattattttgtt |
16390555 |
T |
 |
| Q |
231 |
tatttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttgcctgcaactggc |
330 |
Q |
| |
|
|| | | || | ||||||||| |||||||| ||| |||||| ||||||| || ||||||||||| |||| |||||| ||||||||||||| |||| |
|
|
| T |
16390556 |
aatatgagcttc-attttttcttcacattatgcttcgcattttgaaaataa-gtaacaattaccttcaagtcatttatttctactttgcctgcaattggc |
16390653 |
T |
 |
| Q |
331 |
caattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatattatatgatttgcaa |
430 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
16390654 |
caattcaaaggagggcgatttccttctacgatttctttggcctcactttgtatatgcatatattgatttagcctctcgactgatattatttgatttgcaa |
16390753 |
T |
 |
| Q |
431 |
gagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctggaatg |
516 |
Q |
| |
|
||||||| ||| ||||| ||| || |||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16390754 |
gagtgcactgactttgaattgaattcactaagaaagaatttagtgcaagaccataagatagagccatgccaataaaacctggaatg |
16390839 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 599 - 853
Target Start/End: Original strand, 16390874 - 16391128
Alignment:
| Q |
599 |
ataatacagaaacaatgacatttcggatattcaaataagcaaattctcaccggaactgaaagtccccgacggaagcataaccatgcaaagcgctgtagtg |
698 |
Q |
| |
|
|||||||||||||| ||||||||| || || ||||| |||||||||||| || |||||||||| | ||||| |||||||||||||| |||| || | |
|
|
| T |
16390874 |
ataatacagaaacagtgacatttcagaggttagaataaccaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagag |
16390973 |
T |
 |
| Q |
699 |
gcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaa |
798 |
Q |
| |
|
||||||| || ||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
16390974 |
gcaagaacacctgcacttattgtttctaaccgttggatcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaa |
16391073 |
T |
 |
| Q |
799 |
gattcttctcaaaaaagcgatattcctcctcaaaagctcttattgtctctgctcc |
853 |
Q |
| |
|
||||||||| ||| || |||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
16391074 |
gattcttctgaaagaaacgatcttcctcctcaaaagttcttattgtcactgctcc |
16391128 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 215; Significance: 1e-117; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 31 - 521
Target Start/End: Original strand, 5411 - 5899
Alignment:
| Q |
31 |
ccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaataccaatct |
130 |
Q |
| |
|
||||||||||||| ||| ||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5411 |
ccatcaactataattttccctcctgctggttccactagacgaaataaagcactaataagagtggatttcccacttcctgttcttccaacaataccaatct |
5510 |
T |
 |
| Q |
131 |
tgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaacaaattatgtacgg |
230 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| ||| |
|
|
| T |
5511 |
tgtgccctgctgtaaacgtgcatgtgatcccgtcaagtacaagtggtccgtcaggcctgtatcgtatctggcatggtataaacaaacaaatggtgtgatt |
5610 |
T |
 |
| Q |
231 |
tatttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttgcctgcaactggc |
330 |
Q |
| |
|
||| | | | || |||||||||||||||| |||||||||||||||||| || | ||||||||| | ||| ||||| |||||||||||||||||| |
|
|
| T |
5611 |
cgtttaagatgc-atcttttctgaacattatgcttcacatttttaaaataa-gtaccaattacctttaagtcgtttatttttactttgcctgcaactggc |
5708 |
T |
 |
| Q |
331 |
caattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatattatatgatttgcaa |
430 |
Q |
| |
|
||||||| |||||||| ||| ||||||||| |||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
5709 |
caattcagaggaggacgattaccttctacagtttccttggcctcgctttgtatatgcatatattgatttaatctctctactgatattatgtgattcgcaa |
5808 |
T |
 |
| Q |
431 |
gagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctggaatgaagga |
521 |
Q |
| |
|
||||||||||| ||||| ||| | ||||||||||| ||||||| ||| || || |||| |||||||||||||| ||||| ||| ||||| |
|
|
| T |
5809 |
gagtgcattgattttgaattgaaaatactaaggaattgtttagtgaaaggccgtaggataaagccatgccaataattcctgaaataaagga |
5899 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 672 - 841
Target Start/End: Original strand, 5985 - 6154
Alignment:
| Q |
672 |
agcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatg |
771 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||| | ||||| ||| | ||||||||| ||||||||||||| ||||||| |||| |||| ||||| | |
|
|
| T |
5985 |
agcataaccatgcaaagtgctccagtggtaagaacaactgcactgattatttctaaccgttggatcaaccactcttttgaggaaaaactatggaaaaaag |
6084 |
T |
 |
| Q |
772 |
cactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttat |
841 |
Q |
| |
|
|||||||||| || || ||||| ||||| || ||||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
6085 |
cactagcatttatatcaattaggtcaaggtttttctcaaaaaaacaatcttcctcctcaaaagcccttat |
6154 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 518
Target Start/End: Complemental strand, 16090 - 15598
Alignment:
| Q |
25 |
tctataccatcaactataacttttccttctgttggttccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaatac |
124 |
Q |
| |
|
||||| ||||| | ||||| ||| ||| ||| |||||||||||||||||||| |||||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
16090 |
tctattccatcgattataattttccctcctgctggttccacaagacgaaatagagcactaataagtgtggatttcccacagcctgttcttccaacaatac |
15991 |
T |
 |
| Q |
125 |
caatcttgtgacctgcttcaaatgtgcatgtgatcccgtgaagtacaagtggtccatcaggcctgtatcgtatctagcatggtacgatcaaacaaattat |
224 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| | ||||| ||||| |
|
|
| T |
15990 |
caatcttgcggcctggttcaaatgtgcatgtgatcccatgaagtacaagtggtccttcaggcctgtatcgtatctgacatggtaaaaataaacatattat |
15891 |
T |
 |
| Q |
225 |
gtacggt---atttcaactcccattttttctgaacattatgtttcacatttttaaaataaagtcctaattaccttcaggtcacatatttcgactttgcct |
321 |
Q |
| |
|
|| ||| |||| | || |||||||||||||||| |||| | |||||| ||||| ||| ||||||||||| ||| |||||| ||||||||| |
|
|
| T |
15890 |
gt--ggtttcatttaagct-gcattttttctgaacatgatgtgttgcattttgaaaat-aagcaagaattaccttcaaatcatttatttctactttgcct |
15795 |
T |
 |
| Q |
322 |
gcaactggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatattatat |
421 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| || ||||||| || ||||||| |||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
15794 |
gcaactggccaattcaaaggaggacggttttcttcaactatttcttccgcttcactttttatatgcatatattgatttagtctctccactgatattatgt |
15695 |
T |
 |
| Q |
422 |
gatttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctggaatgaa |
518 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15694 |
aatttgcaagagtgcattgatgttgaattgagtatactaaggcagcgtttagtgataggccataagatagagccatgccaataaatcctgaaatgaa |
15598 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 672 - 844
Target Start/End: Complemental strand, 15444 - 15272
Alignment:
| Q |
672 |
agcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatg |
771 |
Q |
| |
|
||||||||||||||||| |||| || || |||| | |||||| ||| | ||||||||| |||||||||||||||||||||||| | |||| ||||| | |
|
|
| T |
15444 |
agcataaccatgcaaagtgctgcagcggtgagaacaattgcactgattatttctaaccgttggatcaaccactcatttgaggcaataatatggaaaaaag |
15345 |
T |
 |
| Q |
772 |
cactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttattgt |
844 |
Q |
| |
|
||||||||||| || ||||||| ||| |||||||||||| | |||| ||| ||||||||||| |||||||| |
|
|
| T |
15344 |
aactagcattaacatcaattagataaaggttcttctcaaaagaacgatcttcatcctcaaaagcccttattgt |
15272 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 323 - 511
Target Start/End: Complemental strand, 44814528 - 44814340
Alignment:
| Q |
323 |
caactggccaattcaaaggaggacaatttccttctacaatttctttagcctcactttgtatatgcatatattgatttaacctctctactgatattatatg |
422 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||| | ||||| |||||||||| ||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
44814528 |
caactggccaattcaccggagggcgatttccttcaattctttctggagcctcacttggtacatgcatatattgatttagcctctccactgatattatata |
44814429 |
T |
 |
| Q |
423 |
atttgcaagagtgcattgaatttgagttgtatatactaaggaagcatttagtgtaagaccataagatagagccatgccaataaatcctg |
511 |
Q |
| |
|
|||||| | | |||||||| ||||| ||| | |||| |||||||| || |||| ||||||||| || |||||||| ||||||||||||| |
|
|
| T |
44814428 |
atttgctatattgcattgattttgaattgaaaataccaaggaagcgttaagtgaaagaccatatgagagagccattccaataaatcctg |
44814340 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 44814792 - 44814654
Alignment:
| Q |
61 |
tccacaagacgaaataaagcactaataagagtagatttcccactgcctgttcttccaacaataccaatcttgtgacctgcttcaaatgtgcatgtgatcc |
160 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| | || ||||| || || | ||||| |||||||| ||||| ||| |||||||||| |||||||||| |
|
|
| T |
44814792 |
tccactagacgaaataaagcgccaataagagtggtcttgccacttccggtgcgaccaactataccaattttgtgtcctccttcaaatgtacatgtgatcc |
44814693 |
T |
 |
| Q |
161 |
cgtgaagtacaagtggtccatcaggcctgtatcgtatct |
199 |
Q |
| |
|
|| ||||||| ||||| |||||||||| || ||||||| |
|
|
| T |
44814692 |
cgcgaagtactagtggcgcatcaggcctataccgtatct |
44814654 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 723 - 845
Target Start/End: Complemental strand, 44814165 - 44814043
Alignment:
| Q |
723 |
tctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatatt |
822 |
Q |
| |
|
||||||||| | |||||||||||||| | ||||||| ||||||| || | | ||||||| || || |||| | |||||||||| ||||||| ||| || |
|
|
| T |
44814165 |
tctaaccgttgaatcaaccactcattagcggcaaaactatgaaagaaaggagtagcattgatatcaattaaaccaagattctttacaaaaaaacgacctt |
44814066 |
T |
 |
| Q |
823 |
cctcctcaaaagctcttattgtc |
845 |
Q |
| |
|
||| |||||||| ||||||||| |
|
|
| T |
44814065 |
cctgttcaaaagcccttattgtc |
44814043 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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