View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11085_low_20 (Length: 256)
Name: NF11085_low_20
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 49445048 - 49444803
Alignment:
| Q |
1 |
agtttaggaaatttgttccttaagactcgccaccctggcagcctgtttctttgacttgtttatgaattcaattagctagatttatgtctatccttttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49445048 |
agtttaggaaatttgttccttaagactcgccaccctggcagcctgtttctctgacttgtttatgaattcaattagctagatttatgtctatccttttttg |
49444949 |
T |
|
| Q |
101 |
ggtggttgtatgttaaattatgatttgatgcataacctcatggcttgagggtgaaagttgcaaattagtgtttctctttgacacagaagtatggacaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49444948 |
ggtggttgtatgttaaattatgatttgatgcataacctcatggcttgagggtgaaagttgcaaattagtgtttctctttgacacagaagtatggacaaag |
49444849 |
T |
|
| Q |
201 |
cctaaacaaatagttgatttttcaaaggtatctttatttgtctctg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49444848 |
cctaaacaaatagttgatttttcaaaggtatctttatttgtctctg |
49444803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University