View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_21 (Length: 252)
Name: NF11085_low_21
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 31222050 - 31221809
Alignment:
| Q |
1 |
atgagaaaccatgatgatgaccaacatgaatctgggattcctattgaactaggatgttcttgtaaagatgatttggctgctgcccataaacaatgtgctg |
100 |
Q |
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| T |
31222050 |
atgagaaaccatgatgatgaccaacatgaatctgggattcctattgaactaggatgttcctgtaaagatgatttggctgctgcccataaacaatgtgctg |
31221951 |
T |
|
| Q |
101 |
aagcttggtttaaggtcaagggtaacaagtaagttctgcattctcaaattaacattgtctcttaattaggtgtgtaatggatttgtgtgattagttgtga |
200 |
Q |
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| T |
31221950 |
aagcttggtttaaggtcaagggtaacaagtaagttctgcattgtcaaattaacattgtttcttaattaggtgtgtaatggatttgtgtgattagttgtga |
31221851 |
T |
|
| Q |
201 |
cataataataactactttgttgttgttgttgtgagctctgtg |
242 |
Q |
| |
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| T |
31221850 |
cataataataattactttgttgttgttgttgtgagctctgtg |
31221809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 31246436 - 31246306
Alignment:
| Q |
6 |
aaaccatgatgatgaccaacatgaatctgggattcctattgaactaggatgttcttgtaaagatgatttggctgctgcccataaacaatgtgctgaagct |
105 |
Q |
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| T |
31246436 |
aaaccaagatgatgaccaacatgaatcttggactcccattgaactaggatgttcctgtaaagatgacatgtctactgctcataaactatgtgctgaagaa |
31246337 |
T |
|
| Q |
106 |
tggtttaaggtcaagggtaacaagtaagttc |
136 |
Q |
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| T |
31246336 |
tggttcaggatcaagggtaacaagtaagttc |
31246306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 34933848 - 34933739
Alignment:
| Q |
25 |
catgaatctgggattcctattgaactaggatgttcttgtaaagatgatttggctgctgcccataaacaatgtgctgaagcttggtttaaggtcaagggta |
124 |
Q |
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||||||||||| |||||||| || || || |||| ||| ||| |||||||||||||||| ||||| || |||||||| |||||||| ||| | || || | |
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| T |
34933848 |
catgaatctggaattcctatggagcttggttgtttttgcaaaaatgatttggctgctgctcataagcattgtgctgaggcttggttcaagattaaaggca |
34933749 |
T |
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| Q |
125 |
acaagtaagt |
134 |
Q |
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|||||||||| |
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| T |
34933748 |
acaagtaagt |
34933739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 18252432 - 18252387
Alignment:
| Q |
130 |
taagttctgcattctcaaattaacattgtctcttaattaggtgtgt |
175 |
Q |
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||||||||||| | |||||| |||||||| |||||||||||||||| |
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| T |
18252432 |
taagttctgcaatgtcaaataaacattgtttcttaattaggtgtgt |
18252387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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