View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_24 (Length: 243)
Name: NF11085_low_24
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 26325784 - 26326001
Alignment:
| Q |
16 |
ttaatatcaccagaaaatgactatggtattcagcaagggcaggatggtaataatgatctattttcccatgcaatgtcacaacaaaatcatcctggtattc |
115 |
Q |
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| T |
26325784 |
ttaatatcaccagaaaatgactatggtattcaacaagggcaggatggtaataatgatctattttcccatgcaatgtcacaacaaaatcatcctggtattc |
26325883 |
T |
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| Q |
116 |
aacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatttggaatgaataactt |
215 |
Q |
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| T |
26325884 |
aacatggacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatttggaatgaataactt |
26325983 |
T |
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| Q |
216 |
tgaagcgggtagttcatc |
233 |
Q |
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| T |
26325984 |
tgaagcgggtagttcatc |
26326001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 48320120 - 48320064
Alignment:
| Q |
115 |
caacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaa |
171 |
Q |
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||||||| | |||||| ||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
48320120 |
caacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaa |
48320064 |
T |
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