View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_25 (Length: 242)
Name: NF11085_low_25
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 38795518 - 38795316
Alignment:
| Q |
18 |
gatgatgatgaagttccacatgtggactctccgtatccaattccagcttcacaaaactaaattccacaatccaaatattagttagaacagagcatttata |
117 |
Q |
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| T |
38795518 |
gatgatgatgaagttccacatgtggactctccgtatccaattccagctacacaaaactaaattccacaatccaaatattagttagaacagagcatttata |
38795419 |
T |
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| Q |
118 |
aataaatatttgaaaatataggaacgaggaaagtcaactaaaaagagaagtttgaattaattgaaggtaatcacagaagttagttacctgattgggttgt |
217 |
Q |
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| T |
38795418 |
----aatattagaaaatataggaacgaggaaagtcaactaaaaagagaagtttgaattaattgaaggtaatcacagaagttagttacctgattgtgttgt |
38795323 |
T |
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| Q |
218 |
gattgag |
224 |
Q |
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||||||| |
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| T |
38795322 |
gattgag |
38795316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 38770115 - 38770024
Alignment:
| Q |
3 |
atcaacaacttgttggatgatgatgaagttccacatgtggactctccgtatccaattccagcttcacaaaactaaattccacaatccaaata |
94 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||| |
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| T |
38770115 |
atcaacaacttgtttgttgatgatgaagttccacatgtggactctccggattcaattccagcttcacaaaactaaattccacagttcaaata |
38770024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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