View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_3 (Length: 842)
Name: NF11085_low_3
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 178 - 830
Target Start/End: Complemental strand, 36334033 - 36333381
Alignment:
| Q |
178 |
ttcattcaaactccactacacaatagcgccattgtagcacctaattgacaatattttgtaaaaaatagtgtatagcggaacaatagtgatctgatcaaaa |
277 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36334033 |
ttcattcaaactccactacgcaatagcgccattgtagcacctaattgacaatattttgtaaaaaatagtgtatagcggaacaatagtgatctgatcaaaa |
36333934 |
T |
|
| Q |
278 |
taaagagaaagcatcataacaatctatttaattcaacccatcaaaactatgtaaaagatgagtatcagagtaaaagttaaaacttacgagttgagttctt |
377 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333933 |
taaagagaaagcatcataacaatctatttgattcaacccatcaaaacaatgtaaaagatgagtatcagagtaaaagttaaaacttacgagttgagttctt |
36333834 |
T |
|
| Q |
378 |
gtaaccgaaatgggtgcagcagtgcgcattggtttccagaatctgaggtgtgggatgaatgaggagataaacacactgataaaagaaattgccggaggaa |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |||| |
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| T |
36333833 |
ataaccgaaatgggtgcagcagtgcgcattggtttccagaatctgaggggtgggatgaaggaggagataaacacactgataaaagaaagtgccggcggaa |
36333734 |
T |
|
| Q |
478 |
acacggtcaacggtgactttgaaagacttaacaccttcagacgctgatcggagttttttgagtgcgtcgtctggggttaattctattgctcccacgacgg |
577 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36333733 |
acacggtcaacggtgacttggaaagacttaacaccttcagacgctgatcggagttttttgagtgcgtcgtctggggttaactctattgctcccacgacgg |
36333634 |
T |
|
| Q |
578 |
tcatgtggggttcgaactggggtccaccgaaatcggatcggagggaggtcatgagcttggtaaggcggtcgcgtacgtcttctggtgggatcgcccacac |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36333633 |
tcatgtggggttcgaactggggtccaccgaaatcggatcggagggaggtcatgagcttggtaaggcggtcgcgtacgtcttccggtgggatcgcccacac |
36333534 |
T |
|
| Q |
678 |
tgaatacacctccttctttgttgatgatgttgccatttggaatatcaatcacctccttcttgtcgattgtcacagtcacagtcacagggtttctttcttt |
777 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333533 |
tgaatacacctccttctttattgatgatgttgccatttggaatatcaatcacctccttcttgtcgattgtcacagtcacagtcacagggtttctttcttt |
36333434 |
T |
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| Q |
778 |
cccttaaaacatgtgaatagtccatgtgccacatgctccgcatattccctctc |
830 |
Q |
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| T |
36333433 |
cccttaaaacatgtgaatagtccatgtgccacatgctccgcatattccctctc |
36333381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 36334213 - 36334060
Alignment:
| Q |
21 |
tagacccttgagattaaaaaa-tctcattaggccctaactaatccaaggatacgaaagagggaaaactctcgacatctatttgtactacaatactctaat |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36334213 |
tagacccttgagattaaaaaaatctcattaggccctaactaatccaaggatacgaaggagggaaaactctcgacatctatttgtactacaatactctaat |
36334114 |
T |
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| Q |
120 |
tcaagactttgcctgaagggaaccaaactcttcgctacttgattattaaacgtg |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36334113 |
tcaagactttgcctgaagggaaccaaactcttcgctacttgattattaaacgtg |
36334060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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