View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11085_low_30 (Length: 237)

Name: NF11085_low_30
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11085_low_30
NF11085_low_30
[»] chr7 (7 HSPs)
chr7 (1-237)||(39568936-39569172)
chr7 (17-195)||(39542895-39543073)
chr7 (9-161)||(39359222-39359374)
chr7 (4-170)||(39552162-39552329)
chr7 (9-162)||(39344656-39344815)
chr7 (71-193)||(39333454-39333576)
chr7 (9-40)||(39333385-39333416)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39569172 - 39568936
Alignment:
Q  1 atgttttgttgaaggggattctaactaaacattttggtttcttacttttacattttaattttaaagggcctattgaactctcttcatgtacttccaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39569172 atgttttgttgaaggggattctaactaaacattttggtttcttacttttacattttaattttaaagggcctattgaactctcttcatgtacttccaagta 39569073  T
Q  101 gaaaacaacatctaaatattctcagggatgttagtggaatattaaagccttcaaggtatcaaaacaaataatgttatttttattgatttctctttctagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39569072 gaaaacaacatctaaatattctcagggatgttagtggaatattaaagccttcaaggtatcaaaacaaataatgttatttttattgatttctctttctagg 39568973  T
Q  201 acttcttgaactaatataagatgtttcaagttggttc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  39568972 acttcttgaactaatataagatgtttcaagttggttc 39568936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 39543073 - 39542895
Alignment:
Q  17 gattctaactaaacattttggtttcttacttttacattttaattttaaagggcctattgaactctcttcatgtacttccaagtagaaaacaacatctaaa 116  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39543073 gattctaactaaacattttggtttcttactttgacattttcatttgaaagggcctattgaactctcttcatgtgcttccaagtagaaaacaacatctaaa 39542974  T
Q  117 tattctcagggatgttagtggaatattaaagccttcaaggtatcaaaacaaataatgttatttttattgatttctcttt 195  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||  |||||||||||| | || ||||||||||||||    
T  39542973 tattctcagggaggttagtggaataataaagccttcaaggtaccattacaaataatgttctattcattgatttctcttt 39542895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 39359222 - 39359374
Alignment:
Q  9 ttgaaggggattctaactaaacattttggtttcttacttttacattttaattttaaagggcctattgaactctcttcatgtacttccaagtagaaaacaa 108  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  39359222 ttgaaggggattctaactaaacattttggtttatttcttttacattttaattttaaagggcatgttgaactctcttcatgtacttccaagtagaaaacaa 39359321  T
Q  109 catctaaatattctcagggatgttagtggaatattaaagccttcaaggtatca 161  Q
    |||||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  39359322 catctaaatattctcaaggatgttagtggaataataaagccatcaaggtatca 39359374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 39552329 - 39552162
Alignment:
Q  4 ttttgttgaaggggattctaactaaacattttggtttctta-cttttacattttaattttaaagggcctattgaactctcttcatgtacttccaagtaga 102  Q
    |||| |||||||| |||||||||||||| | |||||| ||  |||  ||||||||||| || ||||||| ||||| ||||||||||||||||||||||||    
T  39552329 ttttattgaagggtattctaactaaacaatatggttttttttcttcaacattttaattgtacagggcctgttgaattctcttcatgtacttccaagtaga 39552230  T
Q  103 aaacaacatctaaatattctcagggatgttagtggaatattaaagccttcaaggtatcaaaacaaata 170  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  39552229 aaacaacatctaaatattctcaaggatgttagtggaatattaaagccttcaaggtatcaatacaaata 39552162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 39344656 - 39344815
Alignment:
Q  9 ttgaaggggattctaactaaacattttggtttct--tacttttacattttaatt----ttaaagggcctattgaactctcttcatgtacttccaagtaga 102  Q
    ||||||||||||||||||||||||||||||||||  |  |||||||||||||||    |||||| | |||||||||||||||||||||||||||||||||    
T  39344656 ttgaaggggattctaactaaacattttggtttctgttttttttacattttaattaactttaaagagtctattgaactctcttcatgtacttccaagtaga 39344755  T
Q  103 aaacaacatctaaatattctcagggatgttagtggaatattaaagccttcaaggtatcaa 162  Q
    || |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  39344756 aagcaacgtctaaatattctcaaggatgttagtggaataataaagccttcaaggtatcaa 39344815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 39333454 - 39333576
Alignment:
Q  71 tattgaactctcttcatgtacttccaagtagaaaacaacatctaaatattctcagggatgttagtggaatattaaagccttcaaggtatcaaaacaaata 170  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||| |||  ||    
T  39333454 tattcaactctcttcttgtacttccaagtagaaaacaacatctaaatattctcaaggatgttagcggaataatcaagccttcaaggtatcaatacattta 39333553  T
Q  171 atgttatttttattgatttctct 193  Q
     |||| | || ||||||||||||    
T  39333554 ctgttttattcattgatttctct 39333576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 39333385 - 39333416
Alignment:
Q  9 ttgaaggggattctaactaaacattttggttt 40  Q
    ||||||||||||||||||||||||||||||||    
T  39333385 ttgaaggggattctaactaaacattttggttt 39333416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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