View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_34 (Length: 221)
Name: NF11085_low_34
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_34 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39344613 - 39344393
Alignment:
| Q |
1 |
ttagtactttacctctactatattaaccatgaagttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39344613 |
ttagtactttacctctactatattaaccatgaagttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaat |
39344514 |
T |
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| Q |
101 |
cgaacctctatggtaggaagatcaattccaactctgatatcatcaatggacaagaaaagaatgataagcaaagaaattagtgtattttaaaagcactctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39344513 |
cgaacctctatggtaggaagatcaattccaactctgatatcatcaatgaacaagaaaagaatgataagcaaagaaattagtgtattttaaaagcactctt |
39344414 |
T |
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| Q |
201 |
ttaacatcccctgaggaacaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39344413 |
ttaacatcccctgaggaacaa |
39344393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 39359181 - 39359004
Alignment:
| Q |
1 |
ttagtactttacctctactatattaaccatgaagttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||| |||| ||| |
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| T |
39359181 |
ttagtactttacctctactatattaaccatgaagttagtgaaggtaggcaaagatctgcttcctacacgagcttctgcattgatattcaaacgctcaaat |
39359082 |
T |
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| Q |
101 |
cgaacctctatggtaggaagatcaattccaactctgatatcat-caatggacaagaaaagaatgataagcaaagaaat |
177 |
Q |
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| T |
39359081 |
cgaacctctatcgtaggaagatcaattccaactctgatttcatccaatgaacaagaaaagaatgataagcatagaaat |
39359004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 39333344 - 39333148
Alignment:
| Q |
1 |
ttagtactttacctctactatattaaccatgaagttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| | ||||||||| |
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| T |
39333344 |
ttagtactttacctctactatattaaccatgaagttagtgaaggtaggcaaagatctgcttcctacacgagcttctgcttcaatattgaggtgctcgaat |
39333245 |
T |
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| Q |
101 |
cgaacctctatggtaggaagatcaattccaactctgatatcat-caatggac-aagaaaagaatgataagcaaagaaattagtgtattttaaaagca |
195 |
Q |
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| T |
39333244 |
cgaacttctattgtaggaagatcaattccaactctgacatcatccaatgaacaaaaaaaaggaggagaagcaaagaaatcagtgtatttcaaaagca |
39333148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 39569206 - 39569396
Alignment:
| Q |
8 |
tttacctctactatattaaccatgaagttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaatcgaacct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||| | |
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| T |
39569206 |
tttacctctactatattaaccatgaagttagtgaaggtaggcaaagatctgcttcctacacgagcttctgcttcgatattcaggtgttcgaatcgaactt |
39569305 |
T |
|
| Q |
108 |
ctatggtaggaagatcaattccaactctgatatcat-caatggacaagaaaagaatgataagcaaagaaattagtgtattttaaaagcact |
197 |
Q |
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|||| ||||||||||||| ||||||||||| || || ||||| |||| ||| ||| | ||||||||||||| ||||||||| ||||||||| |
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| T |
39569306 |
ctattgtaggaagatcaactccaactctgacattatccaatgaacaaaaaaggaacggtaagcaaagaaatcagtgtatttcaaaagcact |
39569396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 39543141 - 39543281
Alignment:
| Q |
4 |
gtactttacctctactatattaaccatgaagttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaatcga |
103 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
39543141 |
gtactttaccagtactatattaaccatgaagttagtgaaggtaggcaaagacctgcttcctacattagcttctgcttcgatattcaggtgctcgaatcga |
39543240 |
T |
|
| Q |
104 |
acctctatggtaggaagatcaattccaactctgatatcatc |
144 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
39543241 |
acctctatcgtaggaagatcaattccaactctgatatcatc |
39543281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 39552370 - 39552560
Alignment:
| Q |
8 |
tttacctctactatattaaccatgaagttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaatcgaacct |
107 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39552370 |
tttacctccactatattaaccatgaagttagtgaaggtaggcaaagacctatttcctacatgagcttctgcttcgatattcaagccctcgaatcgaacct |
39552469 |
T |
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| Q |
108 |
ctatggtaggaagatcaattccaactctgatatcat-caatggacaagaaaagaatgataagcaaagaaattagtgtattttaaaagcact |
197 |
Q |
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|||| ||||||||||||||||| ||||||||||||| ||| | | ||||||| ||||||||| ||| |||||||| |||| ||||||||| |
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| T |
39552470 |
ctattgtaggaagatcaattcctactctgatatcatccaaggaagaagaaaacaatgataagaaaattaattagtgcatttcaaaagcact |
39552560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 39578776 - 39578878
Alignment:
| Q |
35 |
ttagtgaaggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaatcgaacctctatggtaggaagatcaattccaactc |
134 |
Q |
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||||||| ||||||||||| | | ||||||| ||| ||||||| ||||||||||| ||||| ||||| || || || |||||||||| ||||||||||| |
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| T |
39578776 |
ttagtgagggtaggcaaagctctttttcctacgtgaacttctgcctcgatattcaagtgctcaaatcggacttcgattgtaggaagattaattccaactc |
39578875 |
T |
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| Q |
135 |
tga |
137 |
Q |
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||| |
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| T |
39578876 |
tga |
39578878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 39584608 - 39584701
Alignment:
| Q |
43 |
ggtaggcaaagatatgcttcctacatgagcttctgcttcgatattcaaatgctcgaatcgaacctctatggtaggaagatcaattccaactctg |
136 |
Q |
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||||||||||| | | ||||||| ||| ||||||||||||| ||||| |||| ||||| || || || |||||||||| ||||||||||||| |
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| T |
39584608 |
ggtaggcaaagctctttttcctacgtgaacttctgcttcgatcttcaagtgctgaaatcggacttcgattgtaggaagattaattccaactctg |
39584701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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