View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_7 (Length: 545)
Name: NF11085_low_7
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 9e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 28846175 - 28846367
Alignment:
| Q |
11 |
cataggaaaaaatggaggattttgagaattttcatttattggaggatgttgataattttgcatatagtgaaaataagcttcccaattgaattgattggga |
110 |
Q |
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| T |
28846175 |
cataggaaaaaatggaggattttgagaattttcatttataagaggatgttgataattttgcatatagtgaaaataagcttgccaattaaattgattggga |
28846274 |
T |
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| Q |
111 |
tccatttgatatgtgcaaaattgagtaaaaataaaacacattttataggcaccatgaaacaaatggtaaaaattgtttagatgttggacaatt |
203 |
Q |
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| T |
28846275 |
tccatttgatatgtgcaaaattgagtaaaaataaaacacattttataggcaccatgaaacaaacggtaaaaattgtttagatgttggacaatt |
28846367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 199 - 400
Target Start/End: Original strand, 28846427 - 28846636
Alignment:
| Q |
199 |
caatttacaggcctaaaacatggtcaaaaattaattctacatgcctttccaacagttacataattaattcattttgtgcttttgctttagagcagctatc |
298 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
28846427 |
caatttacaggcctaaaaaatggacaaaaattaattctacatgcctttccaatggttacataattaattcattttgtgcttttgctttaaagcagttatc |
28846526 |
T |
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| Q |
299 |
t------ataataatatatatgacttaaagatttcataagtcatgaggccaagaata--atatatatgactttatttgcaaatgaactttggctttttca |
390 |
Q |
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| T |
28846527 |
tataataataataatatatatgacttgaagatttccgaagtcatgaggccaagaataatatatatatgactttatttgcaaatgagctttggcttttcca |
28846626 |
T |
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| Q |
391 |
tgttctgctg |
400 |
Q |
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|||||||||| |
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| T |
28846627 |
tgttctgctg |
28846636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 428 - 532
Target Start/End: Original strand, 28846637 - 28846741
Alignment:
| Q |
428 |
gtagaaccagttcttgtggtgcaaccattctccaccttggatgccaagtggatgttctccaatgctaaaaaataacaagaacagtttttgggtgtgtaga |
527 |
Q |
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| T |
28846637 |
gtagaaccagttcttgtggtgcaaccattctccaccttggataccaagtggatgttctccgatgcgaaaaaataacaagaacagtttttgggtgtgtaga |
28846736 |
T |
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| Q |
528 |
acatg |
532 |
Q |
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||||| |
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| T |
28846737 |
acatg |
28846741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 426 - 528
Target Start/End: Original strand, 21183728 - 21183830
Alignment:
| Q |
426 |
atgtagaaccagttcttgtggtgcaaccattctccaccttggatgccaagtggatgttctccaatgctaaaaaataacaagaacagtttttgggtgtgta |
525 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21183728 |
atgtagaaccggttcttgtggtgcaaccgttctccaccttggatgacaagtggatgttctccaatgctaaaaaataacaagaacagtttttaggtgtgta |
21183827 |
T |
|
| Q |
526 |
gaa |
528 |
Q |
| |
|
||| |
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|
| T |
21183828 |
gaa |
21183830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 410 - 532
Target Start/End: Original strand, 190625 - 190747
Alignment:
| Q |
410 |
aaaacaacattttgtcatgtagaaccagttcttgtggtgcaaccattctccaccttggatgccaagtggatgttctccaatgctaaaaaataacaagaac |
509 |
Q |
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|||||| | |||||| ||||||||||||||||| |||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||| |
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| T |
190625 |
aaaacagctttttgttatgtagaaccagttcttatggtacaaccgttctccaccttgaatgacaagtggatgttctccaatgctaaaaaatatcaaaaac |
190724 |
T |
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| Q |
510 |
agtttttgggtgtgtagaacatg |
532 |
Q |
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|||||||||||||||| |||||| |
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| T |
190725 |
agtttttgggtgtgtaaaacatg |
190747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 414 - 522
Target Start/End: Original strand, 7578463 - 7578572
Alignment:
| Q |
414 |
caacattttgtcatgtagaaccagttcttgtggtgcaaccattctccaccttggatgccaagtggatgttctccaatgct-aaaaaataacaagaacagt |
512 |
Q |
| |
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|||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| |
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| T |
7578463 |
caactttttgttatgtagaacatgttcttgtggtgcaaccattctccaccttggatgacatgtggatgttctccaatgctgaaaaaataacaagaacaga |
7578562 |
T |
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| Q |
513 |
ttttgggtgt |
522 |
Q |
| |
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||||| |||| |
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| T |
7578563 |
ttttgagtgt |
7578572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 437 - 531
Target Start/End: Complemental strand, 3812317 - 3812226
Alignment:
| Q |
437 |
gttcttgtggtgcaaccattctccaccttggatgccaagtggatgttctccaatgctaaaaaataacaagaacagtttttgggtgtgtagaacat |
531 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||| |
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| T |
3812317 |
gttcttgtggtgcaaccgttctccaccttaaatgacaagtggatgttctccaatgctaaaacataacaag---agtttttgggcgtgtagtacat |
3812226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 426 - 531
Target Start/End: Original strand, 37731188 - 37731293
Alignment:
| Q |
426 |
atgtagaaccagttcttgtggtgcaaccattctccaccttggatgccaagtggatgttctccaatgctaaaaaataacaagaacagtttttgggtgtgta |
525 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||||||||| |
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| T |
37731188 |
atgtagaaccggttcttgtggtgcaactgttctccaccttggatgacaagtggatgttctccgatactaaaaaataacaagaacaatttttgggtgtgta |
37731287 |
T |
|
| Q |
526 |
gaacat |
531 |
Q |
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|||||| |
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| T |
37731288 |
gaacat |
37731293 |
T |
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