View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11085_low_8 (Length: 501)

Name: NF11085_low_8
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11085_low_8
NF11085_low_8
[»] chr3 (9 HSPs)
chr3 (17-496)||(49445054-49445533)
chr3 (157-219)||(49426476-49426538)
chr3 (159-213)||(49416040-49416094)
chr3 (65-213)||(43359917-43360065)
chr3 (156-206)||(43362339-43362389)
chr3 (176-218)||(49437825-49437867)
chr3 (69-126)||(8312222-8312279)
chr3 (69-134)||(8316678-8316743)
chr3 (157-218)||(49432718-49432779)
[»] chr7 (5 HSPs)
chr7 (177-218)||(12635966-12636007)
chr7 (156-217)||(1333159-1333220)
chr7 (171-219)||(11378461-11378509)
chr7 (157-219)||(32247164-32247226)
chr7 (171-219)||(11375285-11375333)
[»] chr2 (3 HSPs)
chr2 (69-134)||(1019176-1019241)
chr2 (69-127)||(989595-989653)
chr2 (69-126)||(1024755-1024812)
[»] chr1 (3 HSPs)
chr1 (288-338)||(48675098-48675148)
chr1 (157-218)||(1965595-1965656)
chr1 (181-218)||(41662531-41662568)
[»] scaffold0244 (1 HSPs)
scaffold0244 (157-213)||(5720-5776)


Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 49445533 - 49445054
Alignment:
Q  17 attttatcattattaataggccaccgaagattgtattatacctgatgtccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaac 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445533 attttatcattattaataggccaccgaagattgtatgatacctgatgtccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaac 49445434  T
Q  117 cttagaacttgtactcttttgaggttcaaaggcctgcatggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445433 cttagaacttgtactcttttgaggttcaaaggcctgcatggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaa 49445334  T
Q  217 tcactggaccttcgccttgtgattatcttcttcctcccgggcccatgctacatgtcgattttcagtatattgaaagagaattatcctcgttcccaagggc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445333 tcactggaccttcgccttgtgattatcttcttcctcccgggcccatgctacatgtcgattttcagtatattgaaagagaattatcctcgttcccaagggc 49445234  T
Q  317 ctctgctacatgtcaactttcaattgagaatgtcaactatgagtttctcgagaatagttaaggtataaataactggtagtttctctcttatgtttgtcag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445233 ctctgctacatgtcaactttcaattgagaatgtcaactatgagtttctcgagaatagttaaggtataaataactggtagtttctctcttatgtttgtcag 49445134  T
Q  417 ttcgttaacttctactgtggcaactgttgggattggtggcttaaactgtgaacagttatggtcatgaacttcatctcagt 496  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||    
T  49445133 tttgttaacttctactgtggcaactgttgggactggtggcttaaactgtgaaccgttatggtcatgaactttatgtcagt 49445054  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 49426538 - 49426476
Alignment:
Q  157 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 219  Q
    ||||||||||  |||||||| ||||| | |||||||||||||||||||||||||||| |||||    
T  49426538 gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca 49426476  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 49416040 - 49416094
Alignment:
Q  159 gagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 213  Q
    ||||||||  |||||| ||| |||||||||||||| |||||||||||||||||||    
T  49416040 gagcttctattggcaagatacattttgaagaatgctagagttttgcaaaccatga 49416094  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 43359917 - 43360065
Alignment:
Q  65 ccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtgagctt 164  Q
    ||||||||||||||| ||||| |  | |||||| |  |||||||||||| |||||| |||||| || |||| |   |||| |||||  ||||||||| ||    
T  43359917 ccaggaaaattgggtagaccctgcatctgttccgcggtgcatttcattacaccttaaaacttgcacactttggtacttcagaggccaacatggtgaggtt 43360016  T
Q  165 ctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 213  Q
    | | | |||| ||| ||| | || |||||||||||||||||||| ||||    
T  43360017 cagttagcaacatacattcttaataatgcaagagttttgcaaactatga 43360065  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 43362339 - 43362389
Alignment:
Q  156 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaa 206  Q
    ||||||||| |  |||||| ||||||| |||||||||||||||||||||||    
T  43362339 ggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgcaa 43362389  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 49437867 - 49437825
Alignment:
Q  176 atatattttgaagaatgcaagagttttgcaaaccatgacaatc 218  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||    
T  49437867 atatattctgaagaatgcaagagttttgcaaacaatgtcaatc 49437825  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 8312222 - 8312279
Alignment:
Q  69 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 126  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  8312222 gaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaactt 8312279  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 8316678 - 8316743
Alignment:
Q  69 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 134  Q
    ||||||||||| || ||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  8316678 gaaaattgggtggaaccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 8316743  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 49432779 - 49432718
Alignment:
Q  157 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 218  Q
    ||||||||||  |||||| ||||||| | |||||| ||||||||||| ||||||||| ||||    
T  49432779 gtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatc 49432718  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 12635966 - 12636007
Alignment:
Q  177 tatattttgaagaatgcaagagttttgcaaaccatgacaatc 218  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  12635966 tatattttgaagaatgcaagagttttacaaaccatgacaatc 12636007  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 1333220 - 1333159
Alignment:
Q  156 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaat 217  Q
    |||||||||||| | ||||  ||||| ||||||||||| |||||||| ||||||||||||||    
T  1333220 ggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat 1333159  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 11378461 - 11378509
Alignment:
Q  171 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 219  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||||||    
T  11378461 gcaaaatatattttgaagaatgcaaaagtattgcagacaatgacaatca 11378509  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 32247164 - 32247226
Alignment:
Q  157 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 219  Q
    |||||||| || | ||||||||||||||||||||||||||| | || |||| ||||| |||||    
T  32247164 gtgagcttatgttagcaaaatatattttgaagaatgcaagaatgttacaaatcatgaaaatca 32247226  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 11375285 - 11375333
Alignment:
Q  171 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 219  Q
    ||||| ||||||||||||||||||| ||| ||||| | |||||||||||    
T  11375285 gcaaagtatattttgaagaatgcaaaagtattgcagatcatgacaatca 11375333  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 1019241 - 1019176
Alignment:
Q  69 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 134  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  1019241 gaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 1019176  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 989653 - 989595
Alignment:
Q  69 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttg 127  Q
    ||||||||||| || ||||| ||||||||||| ||| |||||| | |||||||||||||    
T  989653 gaaaattgggtggaaccagaatttgttccacaatgcctttcatcataccttagaacttg 989595  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 1024812 - 1024755
Alignment:
Q  69 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 126  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  1024812 gaaaattgggtggacccagaatttgttccacaatgctttttatcacaccttagaactt 1024755  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 48675148 - 48675098
Alignment:
Q  288 gaaagagaattatcctcgttcccaagggcctctgctacatgtcaactttca 338  Q
    ||||| ||||||||||| |  |||||||||||||| |||||||||||||||    
T  48675148 gaaagggaattatcctcatgtccaagggcctctgcaacatgtcaactttca 48675098  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 1965595 - 1965656
Alignment:
Q  157 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 218  Q
    ||||||||||  |||||| ||||||| | |||||| ||| ||||||||||||||||| ||||    
T  1965595 gtgagcttcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatc 1965656  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 41662568 - 41662531
Alignment:
Q  181 ttttgaagaatgcaagagttttgcaaaccatgacaatc 218  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  41662568 ttttgaagaatgcaagagttttacaaaccatgaaaatc 41662531  T

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Target: scaffold0244 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 5776 - 5720
Alignment:
Q  157 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 213  Q
    ||||||||| | | ||||||||||||||||||||| ||||| ||||  |||||||||    
T  5776 gtgagcttcagttagcaaaatatattttgaagaattcaagaattttagaaaccatga 5720  T

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