View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_9 (Length: 436)
Name: NF11085_low_9
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 33879237 - 33878831
Alignment:
| Q |
16 |
ataggccgtaaagcaaattgtaatggtcgcggatctgcatgtttggacccccggtttgttggtgcggatggcattgttttctacttccatggaaggagga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879237 |
ataggccgtaaagcaaattgtaatggtcgcggatctgcatgtttggacccccggtttgttggtgcggatggcattgttttctacttccatggaaggagga |
33879138 |
T |
|
| Q |
116 |
atgagcatttcagcttggtatctgacaccaaccttcaaatcaatgctcgttttatcggccttaggccgcaagggagaccaagggattatacttggattca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879137 |
atgagcatttcagcttggtatctgacaccaaccttcaaatcaatgctcgttttatcggccttaggccgcaagggagaccaagggattatacttggattca |
33879038 |
T |
|
| Q |
216 |
agcattgggagtcctatttgattcacacaacttttctattgaagccacaccatcatcaatttgggatgacgaagttgaccatttgaagctctcttatgat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879037 |
agcattgggagtcctatttgattcacacaacttttctattgaagccacaccatcatcaatttgggatgacgaagttgaccatttgaagctctcttatgat |
33878938 |
T |
|
| Q |
316 |
ggaaaggatctcgtgatccctgaaggtcacctctctacgtggcaatccgaggaaaatcaacttagagtcgagagaacatcgaatgagaacggtgtcatgg |
415 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878937 |
ggaaaggatcttgtgatccctgaaggtcacctctctacgtggcaatccgaggaaaatcaacttagagtcgagagaacatcgaatgagaacggtgtcatgg |
33878838 |
T |
|
| Q |
416 |
tcacaat |
422 |
Q |
| |
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||||||| |
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| T |
33878837 |
tcacaat |
33878831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 422
Target Start/End: Complemental strand, 33874986 - 33874586
Alignment:
| Q |
22 |
cgtaaagcaaattgtaatggtcgcggatctgcatgtttggacccccggtttgttggtgcggatggcattgttttctacttccatggaaggaggaatgagc |
121 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874986 |
cgtaaaccaaattgtaatggtcgcggatctgcatgcttggaccctcggttcgttggtgcggatggcattgttttctacttccatggaaggaggaatgagc |
33874887 |
T |
|
| Q |
122 |
atttcagcttggtatctgacaccaaccttcaaatcaatgctcgttttatcggccttaggccgcaagggagaccaagggattatacttggattcaagcatt |
221 |
Q |
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| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33874886 |
acttcagcttagtatctgacgtgaaccttcaaatcaatgctcgttttatcggtcttaggccgcagcggagaccaagggattatacttggattcaagcatt |
33874787 |
T |
|
| Q |
222 |
gggagtcctatttgattcacacaacttttctattgaagccacaccatcatcaatttgggatgacgaagttgaccatttgaagctctcttatgatggaaag |
321 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||| |||||| |
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| T |
33874786 |
gggagtcctctttgattcacacaacttttctattgaagccacaccatcatcaagttgggatgacgaagttgaccatctgaaactctcctatgacggaaag |
33874687 |
T |
|
| Q |
322 |
gatctcgtgatccctgaaggtcacctctctacgtggcaatccgaggaaaatcaacttagagtcgagagaacatcgaatgagaacggtgtcatggtcacaa |
421 |
Q |
| |
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|| ||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |
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| T |
33874686 |
gaactcgtaatcccaggaggtcacctctctacatggcaatccgaggaaaatcaacttagagtcgagagaacatcgaatgagaacagtgtcatcgttacaa |
33874587 |
T |
|
| Q |
422 |
t |
422 |
Q |
| |
|
| |
|
|
| T |
33874586 |
t |
33874586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 22718799 - 22718591
Alignment:
| Q |
37 |
aatggtcgcggatctgcatgtttggacccccggtttgttggtgcggatggcattgttttctacttccatggaaggaggaatgagcatttcagcttggtat |
136 |
Q |
| |
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||||| || ||||| ||||| ||||| || || |||||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| ||| |||| |
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| T |
22718799 |
aatggccgtggatcagcatgcttggatcctcgctttgttggagcagatggaatagttttctactttcatggaagatccaatgaacatttcaccttagtat |
22718700 |
T |
|
| Q |
137 |
ctgacaccaaccttcaaatcaatgctcgttttatcggccttaggccgcaagggagaccaagggattatacttggattcaagcattgggagtcctatttga |
236 |
Q |
| |
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|||| | || ||||||||||||| ||||| || ||||| || || |||| ||| |||| |||||||| |||||||||||| | ||| | || ||||| |
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| T |
22718699 |
ctgatccaaatgttcaaatcaatgcacgtttcattggcctaagacctgaaggtagaacaagagattatacatggattcaagcacttggaattctctttga |
22718600 |
T |
|
| Q |
237 |
ttcacacaa |
245 |
Q |
| |
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|||||||| |
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|
| T |
22718599 |
atcacacaa |
22718591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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