View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11086_high_8 (Length: 292)
Name: NF11086_high_8
Description: NF11086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11086_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 51181685 - 51181952
Alignment:
| Q |
18 |
gttgcagcagtcacagcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatctgcagcagctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51181685 |
gttgcagcagtcacagcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatctgcagcagctc |
51181784 |
T |
|
| Q |
118 |
tagtagcctctcactgcattgagattgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51181785 |
tagtagcctctcactgcattgagattgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatgg |
51181884 |
T |
|
| Q |
218 |
agatattatgactctaacagccggagcagccacaggtatcagaatctaaagtcgatttattcatctca |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51181885 |
agatattatgactctaacagccggagcagccacaggtatcggaatctaaagtcgatttattcatctca |
51181952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 14180982 - 14180717
Alignment:
| Q |
18 |
gttgcagcagtcacagcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatctgcagcagctc |
117 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
14180982 |
gttgcagcagttgcggcttcaatagcatcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatctgccacagctc |
14180883 |
T |
|
| Q |
118 |
tagtagcctctcactgcattgagattgcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatgg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14180882 |
tagtagcctctcattgcattgagattgcagaagatatgggagctgaacaggaccaaatcataacagcagttgactctgctattaatgcaaaaaccaatgg |
14180783 |
T |
|
| Q |
218 |
agatattatgactctaacagccggagcagccacaggtatcagaatctaaagtcgatttattcatct |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
14180782 |
agatattatgactctaacagccggagcagccacaggtatcagaatttaaagttgatttattcatct |
14180717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University