View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11086_low_1 (Length: 612)
Name: NF11086_low_1
Description: NF11086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11086_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 13 - 594
Target Start/End: Original strand, 37701714 - 37702295
Alignment:
| Q |
13 |
gagacatatagaacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701714 |
gagacatatagaacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataat |
37701813 |
T |
|
| Q |
113 |
actatttctcaacaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701814 |
actatttctcaacaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaa |
37701913 |
T |
|
| Q |
213 |
tttcttaagtaaacaacattactccatatactatatcccctaataataacaagagtttatgatcccaattagagcaattaaaattaaactgaaatcaatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701914 |
tttcttaagtaaacaacattactccatatactatatcccctaataataacaagagtttatgatcccaattagagcaattaaaattaaactgaaatcaatc |
37702013 |
T |
|
| Q |
313 |
aagctttataatgagnnnnnnncactcacatcaatgaaatcagtgagaaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagct |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37702014 |
aagctttataatgagaaaaaaacactcacatcaatgaaatcagtgagaaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagct |
37702113 |
T |
|
| Q |
413 |
gcttcatcttctctggagtctgaggaatcaaaatcatagcagcttcatcaatattcttaaccacaaacaatccattctccatatccttatcttccaaaca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37702114 |
gcttcatcttctctggagtctgaggaatcaaaatcatagcagcttcatcaatattcttaaccacaaacaatccattctccatatccttatcttccaaaca |
37702213 |
T |
|
| Q |
513 |
aaccccagcacnnnnnnncgcaactttatccactctctccgccaacaaaaccaccataactaacaccaacaacattcattct |
594 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37702214 |
aaccccagcacaacaaaacgcaactttctccactctctccgccaacaaaaccaccataactaacaccaacaacattcattct |
37702295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 10223519 - 10223490
Alignment:
| Q |
73 |
atgtaactaattattgtaactaactattac |
102 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
10223519 |
atgtaactaattattgtaactaactattac |
10223490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 14201304 - 14201342
Alignment:
| Q |
77 |
aactaattattgtaactaactattacaactaataatact |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
14201304 |
aactaattattgtaactaactattacatctaataatact |
14201342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 29051325 - 29051289
Alignment:
| Q |
74 |
tgtaactaattattgtaactaactattacaactaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
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|
| T |
29051325 |
tgtaactaattattgtaactaactattacatctaata |
29051289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 486588 - 486634
Alignment:
| Q |
57 |
tctaacttaagtaacca-tgtaactaattattgtaactaactattac |
102 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||||||||||| |
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|
| T |
486588 |
tctaacttaactaaccagtgtaactgattattgtaactaactattac |
486634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 37864137 - 37864101
Alignment:
| Q |
74 |
tgtaactaattattgtaactaactattacaactaata |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| |
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|
| T |
37864137 |
tgtaactaattattgtaaccaactattacatctaata |
37864101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 587
Target Start/End: Original strand, 16511484 - 16511517
Alignment:
| Q |
554 |
ccaacaaaaccaccataactaacaccaacaacat |
587 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
16511484 |
ccaacaaagccaccataactaacaccaacaacat |
16511517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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