View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11086_low_10 (Length: 286)
Name: NF11086_low_10
Description: NF11086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11086_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 5512900 - 5513144
Alignment:
| Q |
21 |
cgtgctataactaaagtaaacaaagcatgaaaatttagttcgatattgatcaaacaattgtttaattgttacatgcaaagaaggacaaatattgctcaaa |
120 |
Q |
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| T |
5512900 |
cgtgctataactaaagtaaacaaagcatgaaaatttagtttgatattgatcaaacaattgtttaattgttacatgcaaagaaggacaaatattgctcaaa |
5512999 |
T |
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| Q |
121 |
ttccaaatttgtttattaatactcctgcaagtgcatgagtttgtcgtcgtaagaaagagaatattcaatattgtatccacatatatctgtgaatctcaaa |
220 |
Q |
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| T |
5513000 |
ttccaaatttgtttattaatactcctgcaagtgcatgagtttgtcgtcgtaagaaagagaatattcaatattgtatccacatatatctgtgaatctcaaa |
5513099 |
T |
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| Q |
221 |
gctatctatttctcctaaaacacaactaaaaatattttgggtttt |
265 |
Q |
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| T |
5513100 |
gctatctatttctcctaaaacacaactaaaaatattttgggtttt |
5513144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 5455425 - 5455181
Alignment:
| Q |
21 |
cgtgctataactaaagtaaacaaagcatgaaaatttagttcgatattgatcaaacaattgtttaattgttacatgcaaagaaggacaaatattgctcaaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5455425 |
cgtgctataactaaagtaaacaaagcatgaaaatttagtttgatattgatcaaacaattgtttaattgttacatgcaaagaaggacaaatattgctcaaa |
5455326 |
T |
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| Q |
121 |
ttccaaatttgtttattaatactcctgcaagtgcatgagtttgtcgtcgtaagaaagagaatattcaatattgtatccacatatatctgtgaatctcaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||||| |
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| T |
5455325 |
ttccaaatttgtttattaatactcctgcaagtgcatgagtttgtcgtcgtaagaaagagagta---aatattgtatccacatagacctgtgaatctcaag |
5455229 |
T |
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| Q |
221 |
gctatctatttctcctaaaacacaactaaaaatattttgggttttaga |
268 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5455228 |
gctacctatttctcctaaaacgcaactaaaaatattttgggttttaga |
5455181 |
T |
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