View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11086_low_3 (Length: 515)
Name: NF11086_low_3
Description: NF11086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11086_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 261 - 499
Target Start/End: Original strand, 47713923 - 47714177
Alignment:
| Q |
261 |
gaaagcaacgctttgttaatcatcacacaacttattattatgaagattttatgtcgtcaaaactatagcctgcattcataccgcat-------------- |
346 |
Q |
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| T |
47713923 |
gaaagcaacgctttgttaatcatcacacaacttattattatgaagattttatgtcgtcaaaactatagcctgcattcataccgcatgtgtcatcctagtt |
47714022 |
T |
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| Q |
347 |
--ttaatgatatgtcacatgtgcgtcagcgttgtcacaattgagggatggaccacttatgccaaaggagtaaacttaatggttaaaattgcaagtaagtg |
444 |
Q |
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| T |
47714023 |
acttaatgatatgtcacatgtgcgtcagcgttgtcacaattgagggatggaccacttatgccaaaggagtaaacttaatggttaaaattgcaagtaagtg |
47714122 |
T |
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| Q |
445 |
gtattgaagagatcataatattcgctgccaattgaaaagccaacaaaaccattac |
499 |
Q |
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| T |
47714123 |
gtattgaagagatcataatattcgctgccaattgaaaagccaacaaaaccattac |
47714177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 47713663 - 47713858
Alignment:
| Q |
1 |
tattaagtagtagatgattgaagctttggatatgaaagtcggtcaatgaattaattttccgtggttgaagttatttgttgactaaaatttgttgaaacaa |
100 |
Q |
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| T |
47713663 |
tattaagtagtggatgattgaagctttggatatgaaagtcggtcaatgaattaattttccgtggttgaagttatttgttgactaaaatttgttgaaacaa |
47713762 |
T |
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| Q |
101 |
agcttttagacttttatcattcagttgtgaaagaaatgaaatatgctagtaacatctaatttttataatcaaaacacttatgactaatggcttgca |
196 |
Q |
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| T |
47713763 |
agcttttagacttttatcattcagttgtgaaagaaatgaaatatgctagtaacatctaatttttataatcaaaacacttatgactaatggcttgca |
47713858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 47721270 - 47721325
Alignment:
| Q |
444 |
ggtattgaagagatcataatattcgctgccaattgaaaagccaacaaaaccattac |
499 |
Q |
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| T |
47721270 |
ggtattgaagagatcatagtattcgctgccaattgaaaagccaacaaaaccattac |
47721325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 47728262 - 47728317
Alignment:
| Q |
444 |
ggtattgaagagatcataatattcgctgccaattgaaaagccaacaaaaccattac |
499 |
Q |
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| T |
47728262 |
ggtattgaagagatcatagtattcgctgccaattgaaaagccaacaaaaccattac |
47728317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 47745015 - 47745072
Alignment:
| Q |
286 |
cacaacttattattatga---agattttatgtcgtcaaaactatagcctgcattcatacc |
342 |
Q |
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| T |
47745015 |
cacaacttattattatgaagtagattttatgtcgtcaaaattat--cctgcattcatacc |
47745072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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