View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11086_low_6 (Length: 417)
Name: NF11086_low_6
Description: NF11086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11086_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 46790221 - 46790620
Alignment:
| Q |
18 |
ggtatttcttaggtaagcctctaatgcttctgatgaagtcaaaagctgcttgtgtgtcattatagtttggaagatgaggtaatgaaggagttgaaagtgg |
117 |
Q |
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| T |
46790221 |
ggtatttcttaggtaagcctctaatgcttctgatgaagtcaaaagctgcttgtgtgtcattatagtttggaagatgaggtaatgaaggagttgaaagtgg |
46790320 |
T |
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| Q |
118 |
tgtatgaatcccactgtattgtactataccagtggatgtagtattatcaaactctaatcctgcttcacttgaatatgctcttgcagccatatagtagtga |
217 |
Q |
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| T |
46790321 |
tgtatgactccaactgtattgtactataccagtggctgtggtattatcaaactctaatcctgctgcacttgaatatgctcttgcagccatatagtagtga |
46790420 |
T |
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| Q |
218 |
ctaggttcttggttggcatgcaacaatacatccattgtttgtcctggtgatatgcaaatgtaatctcttgtcattggttttgtgtacatagcatcagcac |
317 |
Q |
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| T |
46790421 |
ctaggttcttggttggcatgtaacaatacatccattgtttgtcctggtgatatgcaaatgtaatctctcgtcattggttttgtgtacatagcatcagcac |
46790520 |
T |
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| Q |
318 |
caacaacagtgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaacacgtagaagatatgtccttccctgttctactct |
417 |
Q |
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| T |
46790521 |
caacaacagtgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaacacgtagaagatatgtccttccctgttctactct |
46790620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 30 - 417
Target Start/End: Original strand, 46782788 - 46783178
Alignment:
| Q |
30 |
gtaagcctctaatgcttctgatgaagtcaaaagctgcttgtgtgtcattatagtttggaagatgaggtaatgaaggagttgaaagtggtgtatgaatccc |
129 |
Q |
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| T |
46782788 |
gtaagccgctaatgcttctgatgaagttaaaagctgcttgtgtgtcattatagttgggaagaaaaggtaatgaagaagttgaaattggagtataactctc |
46782887 |
T |
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| Q |
130 |
actgtattgtactataccagtggatgtagtattatcaaactctaatcctgctt---cacttgaatatgctcttgcagccatatagtagtgactaggttct |
226 |
Q |
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| T |
46782888 |
tctgtattgcactatagcagtggttgtggtgttatcaaactctactcttgcgttatcagttgaatatgctcttgcagccatatagtagtgactaggttct |
46782987 |
T |
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| Q |
227 |
tggttggcatgcaacaatacatccattgtttgtcctggtgatatgcaaatgtaatctcttgtcattggttttgtgtacatagcatcagcaccaacaacag |
326 |
Q |
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| T |
46782988 |
tggttggcatgtaacaatacatccattgtttgtcctggtgatatgcaaatgtaatctctcgtcattggttttgtgtacatagcatcagcaccaacaacag |
46783087 |
T |
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| Q |
327 |
tgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaacacgtagaagatatgtccttccctgttctactct |
417 |
Q |
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| T |
46783088 |
tgagtttatgtttagaaattgagaaaaagagaatgagattcattgcagcattaacaacacgtagaagatatgtccttccctgttctactct |
46783178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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