View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11086_low_7 (Length: 328)
Name: NF11086_low_7
Description: NF11086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11086_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 36313129 - 36313348
Alignment:
| Q |
98 |
gaacagatatcatattgccccaaaaagaagcacgatcattataataattgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaat |
197 |
Q |
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| T |
36313129 |
gaacagatataatattgccccaaaaagaagcacgatcattataatagttgttttcatggttataacgaactggcatgtgcaaatcattaatctgatcaat |
36313228 |
T |
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| Q |
198 |
gcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttca |
297 |
Q |
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| T |
36313229 |
gcagcttttctccaaaccttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcatttatcaataatggcgagcacaccaagttca |
36313328 |
T |
|
| Q |
298 |
gtgagcttgtgtcctttcat |
317 |
Q |
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|||||||||||||||||||| |
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| T |
36313329 |
gtgagcttgtgtcctttcat |
36313348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 36333266 - 36333415
Alignment:
| Q |
169 |
ggcatgcgcaaatcattaatctgatcaatgcagctttt-ctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcat |
267 |
Q |
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||||| |||| |||||| || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
36333266 |
ggcattcgcatatcattgatttgatcaatgcacctttttctccaaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcct |
36333365 |
T |
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| Q |
268 |
ttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcat |
317 |
Q |
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| T |
36333366 |
ttatcaataatggcgagcacaccaagttgagtgagcttgtgtcctttcat |
36333415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 145 - 316
Target Start/End: Original strand, 36327418 - 36327589
Alignment:
| Q |
145 |
ttgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgt |
244 |
Q |
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| T |
36327418 |
ttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgt |
36327517 |
T |
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| Q |
245 |
caagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttca |
316 |
Q |
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| T |
36327518 |
caagagactcaagaagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttca |
36327589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 36335978 - 36336119
Alignment:
| Q |
176 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
275 |
Q |
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||||||| || ||||| |||||||| ||||||| |||| ||||||||||| | ||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
36335978 |
gcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagagggcatttatcaat |
36336077 |
T |
|
| Q |
276 |
aatggcgagcacaccaagttcagtgagcttgtgtcctttcat |
317 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||| |
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| T |
36336078 |
aatggcgagcacgccaagttcagtgagcttgtgtcctctcat |
36336119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 36320605 - 36320746
Alignment:
| Q |
176 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
275 |
Q |
| |
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||||||| || ||||| |||||||| |||||| |||| |||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |
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| T |
36320605 |
gcaaatccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggacatttatcaat |
36320704 |
T |
|
| Q |
276 |
aatggcgagcacaccaagttcagtgagcttgtgtcctttcat |
317 |
Q |
| |
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|||||| |||||||||||||| |||| |||||||||||||| |
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| T |
36320705 |
aatggcacgcacaccaagttcactgagattgtgtcctttcat |
36320746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 36325639 - 36325726
Alignment:
| Q |
230 |
gacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcat |
317 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
36325639 |
gacaaacactaatgtcaagagattcaagaagagggcatttatcaattatggcgagcacacgaagttcactgagcttgtgtcctttcat |
36325726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 36313050 - 36313106
Alignment:
| Q |
16 |
aataatatcctagtttttcatcatcgctatcacttaaacttccacacaataatgaaa |
72 |
Q |
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| T |
36313050 |
aataatatcctagtttttcatcatcgctatcacttaaacttccacacaataatgaaa |
36313106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 36309083 - 36309194
Alignment:
| Q |
176 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaa------ataatgacaatcacgaatgtcaagagattcaagaagagggcattt |
269 |
Q |
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| T |
36309083 |
gcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaattcaagataatgtcatcgacgaatgtcaagagatttaagcagagggcactt |
36309182 |
T |
|
| Q |
270 |
atcaataatggc |
281 |
Q |
| |
|
| ||| |||||| |
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|
| T |
36309183 |
aacaagaatggc |
36309194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 36333162 - 36333206
Alignment:
| Q |
17 |
ataatatcctagtttttcatcatcgctatcacttaaacttccaca |
61 |
Q |
| |
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|||||| ||||||||||||||||| | |||||||| ||||||||| |
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| T |
36333162 |
ataatagcctagtttttcatcatcaccatcacttagacttccaca |
36333206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 16052979 - 16053027
Alignment:
| Q |
243 |
gtcaagagattcaagaagagggcatttatcaataatggcgagcacacca |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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|
| T |
16052979 |
gtcaagagattcaagaaaagggcatttatcaagaatggcgagcaaacca |
16053027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 15936262 - 15936214
Alignment:
| Q |
243 |
gtcaagagattcaagaagagggcatttatcaataatggcgagcacacca |
291 |
Q |
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||||||||||||||||| ||| |||||||||| ||||||||||| |||| |
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| T |
15936262 |
gtcaagagattcaagaaaaggccatttatcaagaatggcgagcaaacca |
15936214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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