View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11087_high_1 (Length: 669)
Name: NF11087_high_1
Description: NF11087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11087_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 79 - 651
Target Start/End: Original strand, 43062205 - 43062774
Alignment:
| Q |
79 |
gaaatacgtagtaacacactggtatcagagctcccaaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaa |
178 |
Q |
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| T |
43062205 |
gaaatacgtagcaacacactggtatcagagctcccaaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaa |
43062304 |
T |
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| Q |
179 |
atctagttccgatttccaatgttttttgtcactgattcgtattactgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatt |
278 |
Q |
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| T |
43062305 |
atctagttccgatttccaatgttttttgtcactgattcgtattattgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatt |
43062404 |
T |
|
| Q |
279 |
tggtttctgtattcgggcataggttattaactatcaaaattatgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttat |
378 |
Q |
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| T |
43062405 |
tggtttctgtattcgggcataggttattaactatcaaaattttgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttat |
43062504 |
T |
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| Q |
379 |
gaaatatgacatcagttatagtagttaatgcgttattatagtccttcctaacactacccnnnnnnnnnngtctttcgcactcgattatcacttaactttt |
478 |
Q |
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| T |
43062505 |
gaaatatgacatcagttatagtagttaatgcgttattatagtccttcctaacactaccc---tttttttgtctttcgcacttgattatcacttaactttt |
43062601 |
T |
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| Q |
479 |
ctcacaagcatttttgtgacatgcttccaactttgcaaaatttgaaaagaaatgtggtcttgaagataaatttggatgagtactgatcatagggactttc |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062602 |
ctcacaagcatttttgtgacatgcttccaactttgcaaaatttgaaaagaaatgtggtcttgaagataaatttggatgagtactgatcatagggactttc |
43062701 |
T |
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| Q |
579 |
tttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatcatgttatgatactgatcatag |
651 |
Q |
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| T |
43062702 |
tttcactcctatatttattagtttacctttttgaaggaatcgtaattgaatcatgttatgatactgatcatag |
43062774 |
T |
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