View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11087_high_3 (Length: 444)
Name: NF11087_high_3
Description: NF11087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11087_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 45 - 430
Target Start/End: Original strand, 42658525 - 42658909
Alignment:
| Q |
45 |
cattttggttgtcatatcttaagtggagatgttctactttttgtcctatcttgaaggtcgctgattttatattatttcaggtccttactgtgggagcact |
144 |
Q |
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| T |
42658525 |
cattttggttgtcatatcttaagtggagatgttctactttttgtc-tatcttgaaggtcgctgattttatattatttcaggtccttactgtgggagcact |
42658623 |
T |
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| Q |
145 |
tcatcaagctgattctgctgctcttagggttgctgcttctgcttggcataatgagttagctacactgccaaagcccttgcttgtggttaacatcggggga |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42658624 |
tcatcaagctgattctgctgctcttagggttgctgcttctgcttggcataatgagttagctacactgccaaagcccttgcttgtggttaacatcggggga |
42658723 |
T |
|
| Q |
245 |
cctacaggtattttatcttccattaagtgatttataatgctctttctattgtattttatgaagttttataatgttcattatgatttgtgtagtttgacat |
344 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42658724 |
cctgcaggtattttatcttccattaagtgatttataatgctctttctattgtattttatgaagttttataatgttcattatgatttgtgtagtttgacat |
42658823 |
T |
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| Q |
345 |
atgtagaagttgctattaatgtatatatatgctcatgcgcctgatgactgcgtaatctttgtcttaaaaggatgaaaatgttcatc |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42658824 |
atgtagaagttgctattaatgtatatatatgctcatgcgcctgatgactgcgtaatctttgtcttaaaaggatgaaaatgttcatc |
42658909 |
T |
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