View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11087_low_2 (Length: 548)
Name: NF11087_low_2
Description: NF11087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11087_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 5781908 - 5782453
Alignment:
| Q |
1 |
tagattcgagagtgaagatgacggagtcaggacttgtatcgccgccgccggtgacggtgttggcggtggtgttgcgtgttcttgaaccggtgttacgcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5781908 |
tagattcgagagtgaagatgacggagtcaggacttgtatcgccgccgccggtgacggtgttggcggtggtgttgcgtgttcttgaaccggtgttacgcct |
5782007 |
T |
|
| Q |
101 |
ccacgaacgtcgttgttcgtgaaaccctaaatcacgcattgttaacaaacatcgattcgcatttgcatttggttttgcatttaccagatgaagaaagggt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5782008 |
ccacgagcgtcgttgttcgtgaaaccctaaatcacgcattgttaacaaacatcgattcgcatttgcatttggttttgcatttaccagatgaagaaagggt |
5782107 |
T |
|
| Q |
201 |
tagagaagcatagtccaagacagtgaagagaaagtaaatatggcgggtattgcgatttagcgtaaatatagtgtaaagtgtactgtatgtaataa----- |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5782108 |
tagagaagcatagtccaagacagtgaagagaaagtaaatatggcgggtattgcgatttagcgtaaatatagtgtaaagtgtactgtatgtaataattaaa |
5782207 |
T |
|
| Q |
296 |
---ttaaataagagaaaatggaagatacactgcaagtgtaaactagttttttatcaacattcaattgag--------atttggataattgctatttttac |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5782208 |
tacttaaataagagaaaatggaagatacactgcaagtgtaaactagttttatatcaacattcaattgagatttggtcatttggataatagctatttttac |
5782307 |
T |
|
| Q |
385 |
aaagcgggttataatctatgcttacacagcaaggcgatgaacgacagagtgaaactatttcacactgtcagtgcacctttattaagtttattaaataaaa |
484 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5782308 |
aaagcgggttataatctatgcttacacagtaaggcgatgaacgacagagtgaaactatttcacactgtcagtgcacctttatcaagtttattaaataaaa |
5782407 |
T |
|
| Q |
485 |
agaagagcaaattgtcgttttagt-cttgact-tgcacctcgctgt |
528 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||| ||||||||||||| |
|
|
| T |
5782408 |
agaagagcaaattgtcattttagtccctgactctgcacctcgctgt |
5782453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University