View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11087_low_3 (Length: 510)

Name: NF11087_low_3
Description: NF11087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11087_low_3
NF11087_low_3
[»] chr2 (3 HSPs)
chr2 (1-221)||(9115240-9115462)
chr2 (258-494)||(9114999-9115235)
chr2 (375-452)||(3596508-3596585)
[»] chr8 (3 HSPs)
chr8 (342-486)||(35661446-35661589)
chr8 (376-412)||(14529588-14529624)
chr8 (397-477)||(38948632-38948712)
[»] chr3 (2 HSPs)
chr3 (343-486)||(46170431-46170574)
chr3 (341-474)||(39018902-39019034)
[»] chr6 (4 HSPs)
chr6 (344-483)||(10040449-10040588)
chr6 (340-436)||(35019015-35019111)
chr6 (381-483)||(34392123-34392225)
chr6 (381-483)||(34480872-34480973)
[»] chr5 (1 HSPs)
chr5 (339-486)||(42943512-42943659)
[»] chr4 (4 HSPs)
chr4 (345-484)||(41702884-41703023)
chr4 (337-486)||(4513632-4513780)
chr4 (339-483)||(23613137-23613277)
chr4 (354-483)||(19504878-19505007)
[»] chr1 (4 HSPs)
chr1 (402-483)||(29525541-29525622)
chr1 (339-410)||(29525908-29525978)
chr1 (339-436)||(4641813-4641910)
chr1 (399-483)||(30307994-30308078)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9115462 - 9115240
Alignment:
Q  1 atatagcaaacaattgagattcattgttagcaatttttgtttgttcgtttgagataaatattgtggaaaaaatattgtacagtacatgattggtttcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9115462 atatagcaaacaattgagattcattgttagcaatttttgtttgttcgtttgagataaatattgtggaaaaaatattgtacagtacatgattggtttcttg 9115363  T
Q  101 gccaaagatcaatgttaaatatccaattattaccaagcact---tatattttatggcacatgaagtacacatttgaatgattaattgtgtctactgtcta 197  Q
    ||||||||||||||| |||||||||||| ||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9115362 gccaaagatcaatgtcaaatatccaattgttacctagcacttactatattttatggcacatgaagtacacatttgaatgattaattgtgtctactgtcta 9115263  T
Q  198 atatatacgtgacatattggccta 221  Q
    ||| ||||||||||||||||||||    
T  9115262 ata-atacgtgacatattggccta 9115240  T

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Target: chr2; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 258 - 494
Target Start/End: Complemental strand, 9115235 - 9114999
Alignment:
Q  258 tttactgagttgctgcaagggattgatggtagtttttaggtgcaacaccatatttattgagtttttaggattagaatgcccccaacttacaccactaaaa 357  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||    
T  9115235 tttattgagttgctgcaagggattgatggtagtttttaggtgcaacaccatatttattgagtttttaggattagattgttcc-aacttacaccactaaaa 9115137  T
Q  358 taacagt-ttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaa 456  Q
    |||||   ||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||    
T  9115136 taacacccttgtaacatctttttcatcataagattcggtcctttaaaataaatttataatatatcaatggtttatattgaggtggtgtaagttggagtaa 9115037  T
Q  457 taaatttgatggtccaaactatactttgccattgggat 494  Q
    | ||||||||||||||||||||||||||||||||||||    
T  9115036 tgaatttgatggtccaaactatactttgccattgggat 9114999  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 452
Target Start/End: Complemental strand, 3596585 - 3596508
Alignment:
Q  375 ttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttgga 452  Q
    ||||||||||| | |||  |||||||| ||||||||||  ||||||||| |  ||||||||| | |||||||||||||    
T  3596585 ttttttatcatgaaatctcgtccgttagaataaatttaaaatatatcaacgacttatattgaagcggtgtaagttgga 3596508  T

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Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 342 - 486
Target Start/End: Complemental strand, 35661589 - 35661446
Alignment:
Q  342 acttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtgg 441  Q
    |||||||||||||||||||||  |||||||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||    
T  35661589 acttacaccactaaaataacaccttgtaacagcttctttatcataagatccggaccgttaaaataaatttataatatatcaatggcttatattg-ggtgg 35661491  T
Q  442 tgtaagttggaacaataaatttgatggtccaaactatactttgcc 486  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||||    
T  35661490 tgtaagttggagcaatgtatttggtggtccaaactatactttgcc 35661446  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 14529588 - 14529624
Alignment:
Q  376 tttttatcataagatccggtccgttaaaataaattta 412  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  14529588 tttttatcatgagatccgatccgttaaaataaattta 14529624  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 38948712 - 38948632
Alignment:
Q  397 cgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaacta 477  Q
    ||||||||||||||||  |||||||||||  ||||||  | || ||||||||| || ||||  |||||||| |||||||||    
T  38948712 cgttaaaataaatttaaaatatatcaatgacttatatcaaagtagtgtaagttagagcaatgtatttgatgatccaaacta 38948632  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 343 - 486
Target Start/End: Original strand, 46170431 - 46170574
Alignment:
Q  343 cttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggt 442  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||  || ||||||||||||||||| ||||||||||||||||||||||  || |    
T  46170431 cttacaccactaaaataacacgttgtaacatcttttttatcgtaagatctcgttcgttaaaataaatttataatatatcaatggtttatattgaaatgat 46170530  T
Q  443 gtaagttggaacaataaatttgatggtccaaactatactttgcc 486  Q
    |||||||||| ||||  ||||||| |||||||||||||||||||    
T  46170531 gtaagttggagcaatgtatttgatagtccaaactatactttgcc 46170574  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 474
Target Start/End: Original strand, 39018902 - 39019034
Alignment:
Q  341 aacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtg 440  Q
    |||||||||||||||||||||  || |||  |  ||||| ||||| |||||||||| |||||||||||||||  ||||||||||| |||| ||| | |||    
T  39018902 aacttacaccactaaaataaccctt-gtagtaattttttcatcatgagatccggtctgttaaaataaatttaaaatatatcaatgatttagattaaagtg 39019000  T
Q  441 gtgtaagttggaacaataaatttgatggtccaaa 474  Q
    |||||||||||| ||||  ||||| |||||||||    
T  39019001 gtgtaagttggaccaatgtatttggtggtccaaa 39019034  T

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Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 344 - 483
Target Start/End: Complemental strand, 10040588 - 10040449
Alignment:
Q  344 ttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtg 443  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||| |||||||| || |||||||||||  |||| |||||||||||    
T  10040588 ttacaccactaaaataacaccttgtaacaactttttcatcataagatccggtccgttagaataaattaataatatatcaatgacttattttgaggtggtg 10040489  T
Q  444 taagttggaacaataaatttgatggtccaaactatacttt 483  Q
    ||||||||| ||||  ||||| ||||||||||||||||||    
T  10040488 taagttggagcaatctatttggtggtccaaactatacttt 10040449  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 340 - 436
Target Start/End: Original strand, 35019015 - 35019111
Alignment:
Q  340 caacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattga 436  Q
    ||||||||||||||||||||||  |||||| || |||||| ||||||||||||| ||||||| ||||||||||  |||||||||||| |||||||||    
T  35019015 caacttacaccactaaaataaccctttgtagcagctttttcatcataagatccgatccgttagaataaatttaaaatatatcaatggcttatattga 35019111  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 483
Target Start/End: Complemental strand, 34392225 - 34392123
Alignment:
Q  381 atcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatac 480  Q
    ||||| |||||| |||||||| ||||||||||  |||||||||||  ||||||||| |||||||||||| || ||||| ||||| |||||||||||| ||    
T  34392225 atcatgagatccagtccgttacaataaatttaaaatatatcaatgacttatattgaagtggtgtaagttagagcaatatatttggtggtccaaactaaac 34392126  T
Q  481 ttt 483  Q
    |||    
T  34392125 ttt 34392123  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 483
Target Start/End: Original strand, 34480872 - 34480973
Alignment:
Q  381 atcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatac 480  Q
    ||||| |||||| |||||||| ||||||||||  |||||| ||||  ||||||||| |||||||||||||||| |||  ||||||| |||||||||| ||    
T  34480872 atcatgagatccagtccgttagaataaatttaa-atatataaatgacttatattgaagtggtgtaagttggaagaatgtatttgatagtccaaactaaac 34480970  T
Q  481 ttt 483  Q
    |||    
T  34480971 ttt 34480973  T

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Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 339 - 486
Target Start/End: Complemental strand, 42943659 - 42943512
Alignment:
Q  339 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgagg 438  Q
    ||||||||||||||||||||||||   ||||||| |||||| ||||||| ||| ||||||||||||||||||||| |||||| ||||| |||||||||||    
T  42943659 ccaacttacaccactaaaataacaccctgtaacaactttttcatcataaaatctggtccgttaaaataaatttataatatattaatggcttatattgagg 42943560  T
Q  439 tggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 486  Q
    |||||||||||||| || |  ||||| | |||||||||||||||||||    
T  42943559 tggtgtaagttggagcattgtatttggtcgtccaaactatactttgcc 42943512  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 345 - 484
Target Start/End: Original strand, 41702884 - 41703023
Alignment:
Q  345 tacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgt 444  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||| |  ||||| ||||||||||| |||| ||||||| |||||||||||||||||    
T  41702884 tacaccactaaaataacaccttgtaacagcttttttatcataagatccagatcgttagaataaatttataatatgtcaatggcttatattgaggtggtgt 41702983  T
Q  445 aagttggaacaataaatttgatggtccaaactatactttg 484  Q
    |||||||||||||  ||||  |||||||||||||||||||    
T  41702984 aagttggaacaatgtatttagtggtccaaactatactttg 41703023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 4513632 - 4513780
Alignment:
Q  337 ccccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattga 436  Q
    ||||||||||||||||||||||||||  |||||| | |||||  |||||||||||||| |||||| ||||||||||| |||||||||||  |||||||||    
T  4513632 ccccaacttacaccactaaaataacaccttgtaatagcttttc-atcataagatccggaccgttagaataaatttataatatatcaatgacttatattga 4513730  T
Q  437 ggtggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 486  Q
    |||||||||||||||| ||||  ||||| |||| ||||||||||||||||    
T  4513731 ggtggtgtaagttggagcaatgtatttggtggttcaaactatactttgcc 4513780  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 23613277 - 23613137
Alignment:
Q  339 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgagg 438  Q
    ||||||||||||| ||||||||||  |||||||| |||||| ||||||||||| |||| |||| |||||||     ||| |||||||  |||||||||||    
T  23613277 ccaacttacaccattaaaataacaccttgtaacaactttttcatcataagatcgggtctgttagaataaata----atacatcaatgacttatattgagg 23613182  T
Q  439 tggtgtaagttggaacaataaatttgatggtccaaactatacttt 483  Q
    |||||||||||||| ||||  ||||| ||||||||||||||||||    
T  23613181 tggtgtaagttggagcaatctatttggtggtccaaactatacttt 23613137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 483
Target Start/End: Original strand, 19504878 - 19505007
Alignment:
Q  354 aaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaa 453  Q
    ||||||||  |||||| || |||||| ||||||||||| | ||||| ||||||||||||  |||||||||||  ||||||| |  ||||||||||||||     
T  19504878 aaaataaccctttgtagcagctttttcatcataagatctgatccgtgaaaataaatttaaaatatatcaatgacttatattaaaatggtgtaagttggag 19504977  T
Q  454 caataaatttgatggtccaaactatacttt 483  Q
    ||||  ||||| ||||  |||||| |||||    
T  19504978 caatgtatttggtggtttaaactaaacttt 19505007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 29525622 - 29525541
Alignment:
Q  402 aaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 483  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||| ||||| ||||  |||||||||| |||||||||||||    
T  29525622 aaataaatttatcatatatcaatgatttatattgaggtagtgtaaattggagcaatgtatttgatggttcaaactatacttt 29525541  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 29525978 - 29525908
Alignment:
Q  339 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatt 410  Q
    ||||||||||||||||||||||||  |||||||| |||||| ||||||||||| | ||||||||||||||||    
T  29525978 ccaacttacaccactaaaataacaccttgtaaca-ctttttcatcataagatctgatccgttaaaataaatt 29525908  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 436
Target Start/End: Complemental strand, 4641910 - 4641813
Alignment:
Q  339 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattga 436  Q
    ||||||||| | | |||||||||   ||||| || |||||| ||||| ||||| | ||||||| ||||||||||  |||||||||||  |||||||||    
T  4641910 ccaacttacgctaataaaataaccccttgtagcagctttttcatcatgagatctgatccgttagaataaatttaaaatatatcaatgacttatattga 4641813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 30307994 - 30308078
Alignment:
Q  399 ttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 483  Q
    ||||||||||||||  |||||| ||||  |||||||||  | |||||| ||| || |||  |||||||||||||||||| |||||    
T  30307994 ttaaaataaatttaaaatatataaatgacttatattgaaatagtgtaaattgaaataatgtatttgatggtccaaactaaacttt 30308078  T

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