View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11087_low_5 (Length: 395)
Name: NF11087_low_5
Description: NF11087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11087_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 29611902 - 29612274
Alignment:
| Q |
14 |
agatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttc |
113 |
Q |
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| T |
29611902 |
agatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacacctttatattgtgatcccaagttaactaacataataaacttc |
29612001 |
T |
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| Q |
114 |
catctaatcataattaacttctaactacctacacaaattctaacaaatatctaacacaaagtttttatttgatgtgcatgttttcaggacaactgcaccc |
213 |
Q |
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| T |
29612002 |
catctaatcataattaacttctaactacctaaacaaattctaacaaatatctaacac--agtttttatttgatgtgcatgttttcaggacaactgcacta |
29612099 |
T |
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| Q |
214 |
ctacacacattcgttccctgctttttcaag-aagtcaat--------acttgggattacaatcaacggtgagtacaaattgaggtttttggtttctgttc |
304 |
Q |
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| T |
29612100 |
ctacacagattcgttccctgctttttcaagtcaatcattactgaatcacttgggaccacaatcaacggtgagtacaaattgaggtttttggtttctgttc |
29612199 |
T |
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| Q |
305 |
cttctagcttgtaggtttctagctcattcttaaccagtgaatcacttttttaaattacatatattaggtcataaa |
379 |
Q |
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| T |
29612200 |
cttctagcttgtaggtttctagctcattcttaaccagtgaatcacttttttaaattacatatattaggtcataaa |
29612274 |
T |
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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 38467228 - 38467139
Alignment:
| Q |
42 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaac |
131 |
Q |
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| T |
38467228 |
aagaatatgattcaattagggtaggatacatctttatatagtgatcccaagttaactaacataacaaatttccacctaatcataactaac |
38467139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 17236561 - 17236659
Alignment:
| Q |
42 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttctaacta |
140 |
Q |
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| T |
17236561 |
aagaatatgatacgattagagtaagatatacctttatacagtgatcccaaggtaactaacataattaacttccacctaatcataactaacttctaacta |
17236659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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