View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11088_high_2 (Length: 426)

Name: NF11088_high_2
Description: NF11088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11088_high_2
NF11088_high_2
[»] chr1 (1 HSPs)
chr1 (7-411)||(46358776-46359180)
[»] chr8 (9 HSPs)
chr8 (7-344)||(44459964-44460310)
chr8 (7-344)||(44467497-44467843)
chr8 (195-411)||(44459202-44459420)
chr8 (195-411)||(44466735-44466953)
chr8 (136-239)||(34502468-34502571)
chr8 (7-101)||(34502366-34502460)
chr8 (276-344)||(34502618-34502686)
chr8 (116-161)||(44459445-44459490)
chr8 (116-161)||(44466978-44467023)
[»] chr5 (7 HSPs)
chr5 (72-344)||(40180712-40180978)
chr5 (7-340)||(38605104-38605437)
chr5 (215-341)||(40181526-40181652)
chr5 (208-344)||(38605999-38606135)
chr5 (109-167)||(38605897-38605955)
chr5 (195-334)||(41885617-41885757)
chr5 (222-286)||(40188534-40188598)
[»] chr6 (2 HSPs)
chr6 (104-167)||(410775-410838)
chr6 (195-235)||(410692-410732)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 46359180 - 46358776
Alignment:
Q  7 tcaaatttgtgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaagatcag 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46359180 tcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcag 46359081  T
Q  107 tctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttagatgaatattatcatcagtggaacca-cggcatatttctg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46359080 tctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttagatgaatattatcatcagtggaaccagcggcatatttctg 46358981  T
Q  206 aaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46358980 aaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggc 46358881  T
Q  306 ttcaacaaatttagtttgacaagaggtttcaataacttttaagtgcaaagtgttgttgatgttgtagagtggtgaattgaatggaattaagatctgaata 405  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46358880 ttcaacaaatttagtttgacaagaggtttcaataac-tttaagtgcaaagtgttgttgatgttgtagagtggtgaattgaatggaattaagatctgaata 46358782  T
Q  406 aatttg 411  Q
    ||||||    
T  46358781 aatttg 46358776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 44460310 - 44459964
Alignment:
Q  7 tcaaatttgtgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaagatcag 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44460310 tcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcag 44460211  T
Q  107 tctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttagatgaatattatcatcagtggaaccacggcatatttctga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  44460210 tctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttagatgaatattatcatcggtggaaccacgacatatttctga 44460111  T
Q  207 aacaagggattccagaacaggggtagtgatgaggtcct------tgt---tattcttccaaaccaactttataaagttgataagattatgaggttgaacc 297  Q
    ||||||||||||||||||||||||||||||||| || |      |||   |  || ||||| || |||||||||||| |||||||||||||||   ||||    
T  44460110 aacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattatgaggcgaaacc 44460011  T
Q  298 tttggggcttcaacaaatttagtttgacaagaggtttcaataacttt 344  Q
    ||||||| |||||  |||||||||||  | |||||||||||||||||    
T  44460010 tttggggtttcaattaatttagtttgtgaggaggtttcaataacttt 44459964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 44467843 - 44467497
Alignment:
Q  7 tcaaatttgtgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaagatcag 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44467843 tcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcag 44467744  T
Q  107 tctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttagatgaatattatcatcagtggaaccacggcatatttctga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  44467743 tctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttagatgaatattatcatcggtggaaccacgacatatttctga 44467644  T
Q  207 aacaagggattccagaacaggggtagtgatgaggtcct------tgt---tattcttccaaaccaactttataaagttgataagattatgaggttgaacc 297  Q
    ||||||||||||||||||||||||||||||||| || |      |||   |  || ||||| || |||||||||||| |||||||||||||||   ||||    
T  44467643 aacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattatgaggcgaaacc 44467544  T
Q  298 tttggggcttcaacaaatttagtttgacaagaggtttcaataacttt 344  Q
    ||||||| |||||  |||||||||||  | |||||||||||||||||    
T  44467543 tttggggtttcaattaatttagtttgtgaggaggtttcaataacttt 44467497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 195 - 411
Target Start/End: Complemental strand, 44459420 - 44459202
Alignment:
Q  195 gcatatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga 294  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459420 gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga 44459321  T
Q  295 acctttggggcttcaacaaatttagtttgacaagaggtttcaataacttttaagtgcaaag---tgttgttgatgttgtagagtggtgaattgaatggaa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||| ||||||||||| |||    
T  44459320 acctttggggcttcaacaaatttagtttgacaagaggtttcaataac-tttaagtgcaaagtgttgttgttgatgttgtagagtagtgaattgaattgaa 44459222  T
Q  392 ttaagatctgaataaatttg 411  Q
    ||||||||||||||||||||    
T  44459221 ttaagatctgaataaatttg 44459202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 195 - 411
Target Start/End: Complemental strand, 44466953 - 44466735
Alignment:
Q  195 gcatatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga 294  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44466953 gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga 44466854  T
Q  295 acctttggggcttcaacaaatttagtttgacaagaggtttcaataacttttaagtgcaaag---tgttgttgatgttgtagagtggtgaattgaatggaa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||| ||||||||||| |||    
T  44466853 acctttggggcttcaacaaatttagtttgacaagaggtttcaataac-tttaagtgcaaagtgttgttgttgatgttgtagagtagtgaattgaattgaa 44466755  T
Q  392 ttaagatctgaataaatttg 411  Q
    ||||||||||||||||||||    
T  44466754 ttaagatctgaataaatttg 44466735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 34502468 - 34502571
Alignment:
Q  136 tcccacagaaaaaatatgccgttcttccttagatgaatattatcatcagtggaaccacggcatatttctgaaacaagggattccagaacaggggtagtga 235  Q
    |||||||||||| | ||| | ||||||||||||| ||||||||| |||  ||||||||  |||||| ||||||||||||||||||||||| ||||||| |    
T  34502468 tcccacagaaaatacatgtcattcttccttagataaatattatcttcaacggaaccaccacatattgctgaaacaagggattccagaacaagggtagtaa 34502567  T
Q  236 tgag 239  Q
    ||||    
T  34502568 tgag 34502571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 34502366 - 34502460
Alignment:
Q  7 tcaaatttgtgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaag 101  Q
    |||||||| |||||||||||| || |  |||||||||||  |||||| ||| ||| ||| ||||||||||||| ||||||||  ||| |||||||    
T  34502366 tcaaatttatgaaaaacttcgggtgcaatctttccttggtccaacataaatgcaagggaatgtaggagttgatagagaatccgtgtgttaagaag 34502460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 34502618 - 34502686
Alignment:
Q  276 gataagattatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataacttt 344  Q
    |||||||||||||||   ||||||||||| ||||   |||||||||||| |||||| ||||||||||||    
T  34502618 gataagattatgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataacttt 34502686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 44459490 - 44459445
Alignment:
Q  116 ggccaatatgcttaagcaattcccacagaaaaaatatgccgttctt 161  Q
    |||||||| |||||||||| ||||||||||||| |||| |||||||    
T  44459490 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttctt 44459445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 44467023 - 44466978
Alignment:
Q  116 ggccaatatgcttaagcaattcccacagaaaaaatatgccgttctt 161  Q
    |||||||| |||||||||| ||||||||||||| |||| |||||||    
T  44467023 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttctt 44466978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 344
Target Start/End: Original strand, 40180712 - 40180978
Alignment:
Q  72 gagttgattgagaatcctggtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttagatga 171  Q
    |||||||||||||||||  ||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| ||| |||  | |||||| ||||   |    
T  40180712 gagttgattgagaatccgagtgttaagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttagtgca 40180811  T
Q  172 atattatcatcagtggaaccac---ggcatatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaacttta 268  Q
    | ||  |  ||||||| | ||    ||||||||    | |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | ||    
T  40180812 acatcgtattcagtgggagcagtggggcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaattcta 40180911  T
Q  269 taaagttgataagattatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataacttt 344  Q
     ||||| ||||||||||| |||         ||| | ||||||||||||||||||||||||||||| |||||||||    
T  40180912 caaagtggataagattataagg---------tggtgtttcaacaaatttagtttgacaagaggttttaataacttt 40180978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 38605104 - 38605437
Alignment:
Q  7 tcaaatttgtgaaaaacttcgagtccggtctttccttggcacaacatcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaagatcag 106  Q
    |||||||| |||||||||| |||| | ||||| ||||||  | |||   ||||||| || | |||||||||||||||||||  |||| |||||||| |||    
T  38605104 tcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacatatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccag 38605203  T
Q  107 tctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttagatgaatattatcatcagtggaaccacggcatatttctga 206  Q
    |||   | ||||||||||| |||||||| ||||||||||||| |||| | |||| |||||| | || || |   | ||| | | ||  ||||||| ||||    
T  38605204 tctcggaatggccaatatgtttaagcaagtcccacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctga 38605303  T
Q  207 aacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggct 306  Q
    |||||| ||||||| |||||||||||||||||| |     ||| || |  || || |||| |||||||  |||||| |||||||   ||||||||||| |    
T  38605304 aacaagagattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagaatatgaggagaaacctttggggtt 38605403  T
Q  307 tcaacaaatttagtttgacaagaggtttcaataa 340  Q
    |||||   | |||||||||| |||||||||||||    
T  38605404 tcaactggtatagtttgacaggaggtttcaataa 38605437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 40181526 - 40181652
Alignment:
Q  215 attccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggcttcaacaaa 314  Q
    |||||| |||| |||||  |||||| ||||| |||| |||||||| || |||||| ||||  |||||||| |||||| |||| | | ||| |||| | ||    
T  40181526 attccaaaacatgggtatcgatgagatccttattatccttccaaagcatctttatgaagtatataagattctgaggtggaacttctagggtttcagctaa 40181625  T
Q  315 tttagtttgacaagaggtttcaataac 341  Q
    |||||||||||||||||||||||||||    
T  40181626 tttagtttgacaagaggtttcaataac 40181652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 344
Target Start/End: Original strand, 38605999 - 38606135
Alignment:
Q  208 acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggctt 307  Q
    ||||||||||| ||||||||||||||||| |||  ||| | ||| ||||||||| || |||| ||   |||||| || ||||||   |||||||||| ||    
T  38605999 acaagggattcgagaacaggggtagtgattaggcacttataatttttccaaacccaccttatgaacaagataaggttgtgaggtgatacctttggggttt 38606098  T
Q  308 caacaaatttagtttgacaagaggtttcaataacttt 344  Q
     ||| ||||| |||||||||||||||| |||||||||    
T  38606099 gaactaatttggtttgacaagaggtttgaataacttt 38606135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 38605897 - 38605955
Alignment:
Q  109 tgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttag 167  Q
    ||||| |||||||||| ||||||||| ||||||||||||| |||| | |||||||||||    
T  38605897 tgataatggccaatattcttaagcaaatcccacagaaaaagtatgtcattcttccttag 38605955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 334
Target Start/End: Complemental strand, 41885757 - 41885617
Alignment:
Q  195 gcatatttctgaaacaagggattccagaacagggg-tagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttg 293  Q
    |||||||  |||||||||||||||||| |||| || || | | ||||| ||| || ||||||||| |  |  ||| |||||  |||| |||||||||| |    
T  41885757 gcatattgatgaaacaagggattccagtacagtggatactaacgaggtacttctttttcttccaagcacatcttacaaagtgaataaaattatgaggtgg 41885658  T
Q  294 aacctttggggcttcaacaaatttagtttgacaagaggttt 334  Q
    ||| ||||||| || ||| |||||| |||||||||||||||    
T  41885657 aacatttggggtttgaactaatttaatttgacaagaggttt 41885617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 40188598 - 40188534
Alignment:
Q  222 aacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattat 286  Q
    |||| ||||||||| ||| ||||| |||||||||| | |||| |||||| ||| |||||||||||    
T  40188598 aacaagggtagtgaagagatccttattattcttccgagccaattttatatagtggataagattat 40188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 410838 - 410775
Alignment:
Q  104 cagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttag 167  Q
    ||||||||| ||||||||||||||||||||| || |||| ||||| |||| | |||||||||||    
T  410838 cagtctgatggtggccaatatgcttaagcaagtctcacataaaaattatgtcattcttccttag 410775  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 410732 - 410692
Alignment:
Q  195 gcatatttctgaaacaagggattccagaacaggggtagtga 235  Q
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T  410732 gcatattgctgaaataagggactccagaacaggggtagtga 410692  T

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