View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11088_low_1 (Length: 596)
Name: NF11088_low_1
Description: NF11088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11088_low_1 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 6390 - 5799
Alignment:
| Q |
1 |
gttccatgttatccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttctgcatggcttgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6390 |
gttccatgttatccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttatgcatggcttgca |
6291 |
T |
|
| Q |
101 |
acaaccgcaattctgctgcagatctgattgaaaagcttgatgcatttgtgcaacagatggctcagttctaagccatgtgcgccacctccatggctgctca |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6290 |
acaaccgcaattctgctgcagatccgattgaaaagcttgatgcatttgtgcaacatatggctcagttctaagccatgtgcgccacctccatggctgctca |
6191 |
T |
|
| Q |
201 |
gttcactcgcttggaaagtttggaacatcgctatgggatcgtgtcagaacctctcgtttcacagccattgtgtgtttctgatgccaataatccattccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6190 |
gttcactcgcttggaaagtttggaacatcgctatgggatcgtgtcagaacctctcgtttcacagccattgtgtgtttccgatgccaataatccattccac |
6091 |
T |
|
| Q |
301 |
ccgcaaccaaaacccaatgtgcagttaacaccaccaccatcagaatcagaattgaaactcgaacaaaatccaaaagagttcatcacttctcctaaaaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6090 |
ccgcaaccaaaacccaatgtgcagttaacaccaccaccatcagaatcagaattgaaactcgaacaaaatccaaaagagtttatcacttctcctaaaaaat |
5991 |
T |
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| Q |
401 |
tgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacctctcactctgtcagccccaccaccacattatccacatccactggtttaaga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5990 |
tgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacttctcactctgtcagccccaccaccacattatccacatccactggtttaaga |
5891 |
T |
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| Q |
501 |
cgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattcagctctcacattcatctctgt |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5890 |
cgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattcagctctcacattcatttctgt |
5799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 23386078 - 23386669
Alignment:
| Q |
1 |
gttccatgttatccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttctgcatggcttgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23386078 |
gttccatgttatccgactatctcttctgccttcccttcaccgccatctcccaacccatatccatctagctatgataatccaactttatgcatggcttgca |
23386177 |
T |
|
| Q |
101 |
acaaccgcaattctgctgcagatctgattgaaaagcttgatgcatttgtgcaacagatggctcagttctaagccatgtgcgccacctccatggctgctca |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386178 |
acaaccgcaattctgctgcagatccgattgaaaagcttgatgcatttgtgcaacatatggctcagttctaagccatgtgcgccacctccatggctgctca |
23386277 |
T |
|
| Q |
201 |
gttcactcgcttggaaagtttggaacatcgctatgggatcgtgtcagaacctctcgtttcacagccattgtgtgtttctgatgccaataatccattccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23386278 |
gttcactcgcttggaaagtttggaacatcgctatgggatcgtgtcagaacctctcgtttcacagccattgtgtgtttccgatgccaataatccattccac |
23386377 |
T |
|
| Q |
301 |
ccgcaaccaaaacccaatgtgcagttaacaccaccaccatcagaatcagaattgaaactcgaacaaaatccaaaagagttcatcacttctcctaaaaaat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23386378 |
ccgcaaccaaaacccaatgtgcagttaacaccaccaccatcagaatcagaattgaaactcgaacaaaatccaaaagagtttatcacttctcctaaaaaat |
23386477 |
T |
|
| Q |
401 |
tgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacctctcactctgtcagccccaccaccacattatccacatccactggtttaaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386478 |
tgatgaacatcaacaactcggtgggagaaggaaatcacgcagctgcacttctcactctgtcagccccaccaccacattatccacatccactggtttaaga |
23386577 |
T |
|
| Q |
501 |
cgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattcagctctcacattcatctctgt |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23386578 |
cgcggttccacctctggctccttacctaccgccagaacctccaccgtcttcaccgaataagtgcattattcagctctcacattcatttctgt |
23386669 |
T |
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