View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11088_low_3 (Length: 282)
Name: NF11088_low_3
Description: NF11088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11088_low_3 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 6362 - 6618
Alignment:
| Q |
7 |
gcagcagagatagtcggataacatggaacaatgtaggatgaatggaatggatttgtcttgggaggtgttcaaggacgagagcaccaaatgataagtaaaa |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6362 |
gcagaagagatagtcggataacatggaacaatgtaggatgaatggaatggatttgtcttcggaggtgttcaaggacgagagcaccaaatgataagtaaaa |
6461 |
T |
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| Q |
107 |
gattgattattctctgttgtaggacagagaatgagaacctcctaaaaatgagaacctcttaattgcagcttatatccttgctcgtatcaatgaattgggt |
206 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6462 |
gattgattattctctgttataggacagagaatgagaacctcctaagaatgagaacctcttaattgcagcctatatccttgctcgtatcaatgaattgggt |
6561 |
T |
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| Q |
207 |
ataacatgggtatgaaattaaggaggttgaaaaaggcgaacaattcttgggtgtggg |
263 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
6562 |
ataacatgggtatgaaattaaggaagttgaaaaaggagaacaattcttgggtgtggg |
6618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 23386106 - 23385850
Alignment:
| Q |
7 |
gcagcagagatagtcggataacatggaacaatgtaggatgaatggaatggatttgtcttgggaggtgttcaaggacgagagcaccaaatgataagtaaaa |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23386106 |
gcagaagagatagtcggataacatggaacaatgtaggatgaatggaatggatttgtcttcggaggtgttcaaggacgagagcaccaaatgataagtaaaa |
23386007 |
T |
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| Q |
107 |
gattgattattctctgttgtaggacagagaatgagaacctcctaaaaatgagaacctcttaattgcagcttatatccttgctcgtatcaatgaattgggt |
206 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23386006 |
gattgattattctctgttataggacagagaatgagaacctcctaagaatgagaacctcttaattgcagcctatatccttgctcgtatcaatgaattgggt |
23385907 |
T |
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| Q |
207 |
ataacatgggtatgaaattaaggaggttgaaaaaggcgaacaattcttgggtgtggg |
263 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
23385906 |
ataacatgggtatgaaattaaggaagttgaaaaaggagaacaattcttgggtgtggg |
23385850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 22431399 - 22431370
Alignment:
| Q |
126 |
taggacagagaatgagaacctcctaaaaat |
155 |
Q |
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| T |
22431399 |
taggacagagaatgagaacctcctaaaaat |
22431370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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