View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11088_low_4 (Length: 257)
Name: NF11088_low_4
Description: NF11088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11088_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 38795693 - 38795525
Alignment:
| Q |
89 |
ggtctaacctggcataacaaacttgccagttgcatcaatgacatatacatcatctccaaccgcgatagttggattaacagcaacaatgatgccgtcttcg |
188 |
Q |
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| T |
38795693 |
ggtctaacctggcataacaaacttgccagtggcatcaatgacatatacatcatctccaaccgcgatagttggattaacagcaacaatgatgccgtcttcg |
38795594 |
T |
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| Q |
189 |
acataaacatcagtaatctgttggtgatgagcattgacaacagtaccacctttgatcaacaactggttg |
257 |
Q |
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| T |
38795593 |
acataaacatcagcaatctgttggtgatgagcattgacaacagtaccacctttgatcaacaacttgttg |
38795525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 38770190 - 38770106
Alignment:
| Q |
168 |
gcaacaatgatgccgtcttcgacataaacatcagtaatctgttggtgatgagcattgacaacagtaccacctttgatcaacaact |
252 |
Q |
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| T |
38770190 |
gcaacaatgattccatcttcaacataaacatcagcaacatgttggtgatgagcattgacaacagtaccacctttaatcaacaact |
38770106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 38771085 - 38771029
Alignment:
| Q |
93 |
taacctggcataacaaacttgccagttgcatcaatgacatatacatcatctccaacc |
149 |
Q |
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| T |
38771085 |
taacctggcatgacaaacttgccggtggcatctatcacatacacatcatctccaacc |
38771029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 6351859 - 6351919
Alignment:
| Q |
97 |
ctggcataacaaacttgccagttgcatcaatgacatatacatcatctccaaccgcgatagt |
157 |
Q |
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| T |
6351859 |
ctggcataacaaacttgccagtggcatctatgacctatatgtcatctccaaccgtgatagt |
6351919 |
T |
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