View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11088_low_5 (Length: 243)
Name: NF11088_low_5
Description: NF11088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11088_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29838173 - 29838399
Alignment:
| Q |
1 |
ttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggtaccttctaaaattcatacatatttttgagtttaatttacttcctata |
100 |
Q |
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| T |
29838173 |
ttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggtaccttctaaaattcatacatatttttgagtttaatttacttcctata |
29838272 |
T |
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| Q |
101 |
gagaagaatgctgatcaatttgttccggttacttttgtgcgctctttacaggaaacaaccatgtctaatgcttggtatgaggtgttgtcggttttgcatt |
200 |
Q |
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| T |
29838273 |
gagaagaatgctgatcaatttgttccggttacttttgtgcgctctttacaggaaacaaccatgtctaatgcttggtatgaggtgttgtcggttttgcatt |
29838372 |
T |
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| Q |
201 |
tgatgtcaatgctattactgtcaaagg |
227 |
Q |
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| T |
29838373 |
tgatgtcaatgctattactgtcaaagg |
29838399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 34628284 - 34628228
Alignment:
| Q |
149 |
caggaaacaaccatgtctaatgcttggtatgaggtgttgtcggttttgcatttgatg |
205 |
Q |
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| T |
34628284 |
caggaaacagccatgtctaatgcttggtatgaagtgttgtcagtcttgcacttgatg |
34628228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34628444 - 34628391
Alignment:
| Q |
1 |
ttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggta |
54 |
Q |
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||||||||||||||||| |||||||||||||| || || |||||| ||||||| |
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| T |
34628444 |
ttacaatacaaagtacaatttgtttggatgaatcaggaggatgaagcagaggta |
34628391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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