View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_1 (Length: 963)
Name: NF11089_high_1
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 564 - 950
Target Start/End: Complemental strand, 6917921 - 6917535
Alignment:
| Q |
564 |
caaattaccattacttcaagtttttaacctttaccattgatcttggaaacgaccatgtaaccttgttgttctcatgacataagccatttgacttttcaac |
663 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917921 |
caaattaccattacttcaagtttttaacctttaccgttgatcttggaaatgaccatgtaaccttgttgttctcatgacataagccatttgacttttcaac |
6917822 |
T |
|
| Q |
664 |
accagtggacaaattatgttaacatcatagcctctcaaccaaccataacacaggcgtggaaacagcatgcatgtgtgccaagaacagtcatcaaatagtg |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
6917821 |
accagtggacaaattatgttaacatcatagcctctcaaccaaccataacacaggcgtggaaacatcatgcatatgtgccaagaacagtcatcaaatagtg |
6917722 |
T |
|
| Q |
764 |
caaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcatt |
863 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917721 |
caaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcatt |
6917622 |
T |
|
| Q |
864 |
ttatattgagtgtgctcaaacaacaagcaaaaggaaaatcagaacctatatgtttcggaatcaacctcgccgcgctcaatcttgatg |
950 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6917621 |
ttatattgagtgtgctcaaacaacaagcaaatggaaaatcagaacctatatgtttcgaaatcaacctcgccgcgctcaatcttgatg |
6917535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 6920558 - 6920363
Alignment:
| Q |
50 |
tttggaccaagctagtttggaatattagcatgaacattccttttaggaaagagttatccttcgtttgaagttatgagtatttgttcgcctttttccccgg |
149 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6920558 |
tttgggccaagctagtttggaatattagcatgaacattccttttaggaaagagttatccttcgtttgaagttatgagtatttgttcgcctttttccccgg |
6920459 |
T |
|
| Q |
150 |
atgcatgcaatacactttactttgaatggcacatagttcaccttctttccctaaaacaaatacaagcagacagagagttgtttatcattacccattg |
246 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6920458 |
atgcatgcaatgcactttactttgaatggcacatggttcaccttctttccctaaaacaaatacaagcagacagagagtt-tttatcattacccattg |
6920363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 310 - 536
Target Start/End: Original strand, 34821221 - 34821448
Alignment:
| Q |
310 |
catcaccgcatcaaacaa-tccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaaacaccacctccaagataaaacc |
408 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||| ||||||||||| || | |||| || ||||| || |||||||||||||| | |||||| |
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|
| T |
34821221 |
catcaccgcatcaaacaaatcctttggattccagctccattcgtaaaacaaacaagacggcacatccaatcgacctaaacaccacctccaccacaaaacc |
34821320 |
T |
|
| Q |
409 |
ttaattgattctaacaactcttcagtatgtatgacagcattgttaaatataaaatcattcctcgctttccaaatgttccaaatcgcgacatgccatataa |
508 |
Q |
| |
|
|| |||||||| |||| | ||| || || |||||||||||||| |||| |||||||||||||||||| ||| ||||||||||| | ||||| |||| |
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|
| T |
34821321 |
tttattgattccaacagtgcctcaaaatctaaaacagcattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataa |
34821420 |
T |
|
| Q |
509 |
tcctcacgccattacggatcttcttatt |
536 |
Q |
| |
|
|||||| || ||||| ||||| ||||| |
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|
| T |
34821421 |
gcctcactcccttacgaatctttttatt |
34821448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 310 - 564
Target Start/End: Original strand, 38185266 - 38185520
Alignment:
| Q |
310 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaaacaccacctccaagataaaacct |
409 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||| |||||||||||||||| || |||||| | || | ||| || |||||||||||||| | || |||| |
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|
| T |
38185266 |
catcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaacatgccggcaagtttattctaccaaaacaccacctccaggccaacacct |
38185365 |
T |
|
| Q |
410 |
taattgattctaacaactcttcagtatgtatgacagcattgttaaatataaaatcattcctcgctttccaaatgttccaaatcgcgacatgccatataat |
509 |
Q |
| |
|
|||| ||||| | ||| | ||| || | || ||||| ||||| | | ||||||||| |||||||| ||| ||||||| ||| ||||||| |||| |
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|
| T |
38185366 |
taatagattccagcaatgcctcacaatccaacactgcattattaaaagttatatcattcctagctttccatatgctccaaatggcggcatgccaaataag |
38185465 |
T |
|
| Q |
510 |
cctcacgccattacggatcttcttattagatgccgcgtcattccaacattcccac |
564 |
Q |
| |
|
|||||| || |||| ||||| |||||| | |||| |||||||||||||||| |
|
|
| T |
38185466 |
cctcactcccttacaaatctttttattataaaccgctcaattccaacattcccac |
38185520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 312 - 410
Target Start/End: Complemental strand, 53562433 - 53562335
Alignment:
| Q |
312 |
tcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaaacaccacctccaagataaaacctt |
410 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||||| ||||| |||||||| | || ||||| ||||||| |||||||||||| |||||||| |
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|
| T |
53562433 |
tcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaacctt |
53562335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 22153562 - 22153664
Alignment:
| Q |
310 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaaacaccacctccaagataaaacct |
409 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| ||||||| |||||||| ||||| |||||||||| || |||||| | ||||||||||| || |||| |
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|
| T |
22153562 |
catcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacct |
22153661 |
T |
|
| Q |
410 |
taa |
412 |
Q |
| |
|
||| |
|
|
| T |
22153662 |
taa |
22153664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 22209477 - 22209579
Alignment:
| Q |
310 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaaacaccacctccaagataaaacct |
409 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| ||||||| |||||||| ||||| |||||||||| || |||||| | ||||||||||| || |||| |
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|
| T |
22209477 |
catcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacct |
22209576 |
T |
|
| Q |
410 |
taa |
412 |
Q |
| |
|
||| |
|
|
| T |
22209577 |
taa |
22209579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 1557457 - 1557362
Alignment:
| Q |
324 |
acaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaaacaccacctccaagataaaaccttaattgattc |
419 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||| || || ||| | ||||||| ||||||||||||||||| || || |||||||||||||| |
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|
| T |
1557457 |
acaattcttcggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaataccttaattgattc |
1557362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 310 - 412
Target Start/End: Complemental strand, 4903995 - 4903893
Alignment:
| Q |
310 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaaacaccacctccaagataaaacct |
409 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| ||||||| |||||||| |||| ||||||||| || |||||| |||| |||||||| || |||| |
|
|
| T |
4903995 |
catcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacacct |
4903896 |
T |
|
| Q |
410 |
taa |
412 |
Q |
| |
|
||| |
|
|
| T |
4903895 |
taa |
4903893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 1557318 - 1557245
Alignment:
| Q |
463 |
tcattcctcgctttccaaatgttccaaatcgcgacatgccatataatcctcacgccattacggatcttcttatt |
536 |
Q |
| |
|
|||||||| |||||||||||||||||||| | | ||||||| |||| |||||| || || || ||||| ||||| |
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|
| T |
1557318 |
tcattccttgctttccaaatgttccaaatggtggcatgccaaataagcctcacacccttccgaatctttttatt |
1557245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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