View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_high_11 (Length: 483)

Name: NF11089_high_11
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_high_11
NF11089_high_11
[»] chr5 (5 HSPs)
chr5 (2-320)||(19601919-19602235)
chr5 (336-456)||(19602337-19602458)
chr5 (107-196)||(43100959-43101043)
chr5 (110-192)||(9622399-9622477)
chr5 (156-201)||(23418901-23418946)
[»] chr4 (5 HSPs)
chr4 (108-201)||(16529826-16529915)
chr4 (110-201)||(12832436-12832523)
chr4 (110-196)||(38476282-38476364)
chr4 (108-201)||(56192210-56192299)
chr4 (153-201)||(3534047-3534095)
[»] chr7 (4 HSPs)
chr7 (146-201)||(965262-965317)
chr7 (146-193)||(35015911-35015958)
chr7 (121-196)||(16706687-16706757)
chr7 (121-196)||(17680923-17680993)
[»] chr6 (4 HSPs)
chr6 (146-201)||(15489406-15489461)
chr6 (108-201)||(32183771-32183860)
chr6 (107-197)||(20969780-20969866)
chr6 (146-201)||(15135052-15135108)
[»] chr1 (5 HSPs)
chr1 (107-201)||(8259482-8259572)
chr1 (108-201)||(15342871-15342959)
chr1 (110-201)||(14624967-14625054)
chr1 (140-197)||(42693518-42693575)
chr1 (112-201)||(48379474-48379558)
[»] chr2 (2 HSPs)
chr2 (101-169)||(9032748-9032812)
chr2 (146-201)||(19494762-19494817)
[»] scaffold1940 (1 HSPs)
scaffold1940 (151-201)||(584-634)
[»] scaffold0001 (1 HSPs)
scaffold0001 (110-201)||(428283-428369)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 320
Target Start/End: Original strand, 19601919 - 19602235
Alignment:
Q  2 acagattagcactctgacactcaagtcgattagggaaatgtagaaggaaaatgtgtgaaaaatggtgaaaatatgattgtatctagggtgtagcgcatag 101  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||     
T  19601919 acaggttagcactctgacactcaagtcgattagagaaatgttgaaggaaagtgtgtgaaaaatggtgaaaatatgatcgtatctagggtgtggcgcataa 19602018  T
Q  102 caacaattagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||  |   |||||||||||||| ||||||||    
T  19602019 caacacttagaccatctacaatggtgggtgcgtcacctatttaattaggaccacattaaatagacaccctccttatagagtataatatatgagtgtctat 19602118  T
Q  202 tatgatctcttaactgtccttggaataactaactccgagatatccgacgagatatgctaagggcagttaagagatcatatatatatagatgattcacatt 301  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||    
T  19602119 tatgatctcttaactgcccttggcataactaactccgagatatccgacgagatatgctaagggcagttaagagatc--atatatatggatgatttacatt 19602216  T
Q  302 gtacgacatgaggtcaagt 320  Q
    |||||||||||||||||||    
T  19602217 gtacgacatgaggtcaagt 19602235  T

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Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 336 - 456
Target Start/End: Original strand, 19602337 - 19602458
Alignment:
Q  336 aaaaccgtattgataccaaagatgcattcattctgcttttcatatgtcctttgtaacgtataccccgcctccaatggaaagcatatat-aaaacaaaagt 434  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  19602337 aaaacagtattgataccaaagatgcattcattctgcttttcatatgtcctttgtaacgtataccccgcctccaatggaaggcatatataaaaacaaaagt 19602436  T
Q  435 aaataatgaaattagaagttga 456  Q
    ||||||||||||||||||||||    
T  19602437 aaataatgaaattagaagttga 19602458  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 43101043 - 43100959
Alignment:
Q  107 attagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 196  Q
    ||||||||||| ||| |||||||||| | |||||||||    | ||||||||||||| ||||||||| || ||||||||| |||||||||    
T  43101043 attagaccatccaaa-tggtgggtgcttaacctattta----gcaccacattaaataagcaccctcattgtggagtataacatatgggtg 43100959  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 9622477 - 9622399
Alignment:
Q  110 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatg 192  Q
    |||||||| | |||||||||||| |||||||||||    | |||||||||||||| ||||| || || ||||||||| |||||    
T  9622477 agaccatccacaatggtgggtgcttcacctattta----gcaccacattaaatagacacccccattgtggagtataacatatg 9622399  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 23418901 - 23418946
Alignment:
Q  156 attaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    ||||||||||||||| || || ||||||||||||||||||| ||||    
T  23418901 attaaataggcacccccattgtggagtataatatatgggtggctat 23418946  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 16529826 - 16529915
Alignment:
Q  108 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||||||| | |||||||||||| |||||||||||    | |||||||||||||||||||| || || ||||||||||| ||||||| ||||    
T  16529826 ttagaccatccacaatggtgggtgcttcacctattta----gcaccacattaaataggcacccccattgtggagtataatacatgggtggctat 16529915  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 12832523 - 12832436
Alignment:
Q  110 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||||||| |||||||||||| ||||||||    |||| |||||||||||| |||||||  | || ||||||||||| ||||||| ||||    
T  12832523 agaccatctacaatggtgggtgcttcacctat----ttagcaccacattaaatcggcacccctattgtggagtataatacatgggtggctat 12832436  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 38476364 - 38476282
Alignment:
Q  110 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 196  Q
    |||||||||| |||||||||||| ||||||||    |||| |||||||||||||| ||||| || |  | |||||||||||||||||    
T  38476364 agaccatctataatggtgggtgcttcacctat----ttagcaccacattaaatagacacccccattatgaagtataatatatgggtg 38476282  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 56192210 - 56192299
Alignment:
Q  108 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    ||||| |||| | |||||||||||| | ||||||||||     |||||||||||||||||||| |  || |||||| |||||||||||||||||    
T  56192210 ttagatcatccacaatggtgggtgctttacctatttaac----accacattaaataggcacccccgttgtggagtaaaatatatgggtgtctat 56192299  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 3534095 - 3534047
Alignment:
Q  153 cacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||||||||||||||| || || |||| |||||||||||||| ||||    
T  3534095 cacattaaataggcacccccattgtggagaataatatatgggtggctat 3534047  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 965262 - 965317
Alignment:
Q  146 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||| |||||||||||||||||||| || || |||||| |||||||||||||||||    
T  965262 ttagcaccacattaaataggcacccccattgtggagtaaaatatatgggtgtctat 965317  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 35015958 - 35015911
Alignment:
Q  146 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgg 193  Q
    |||| |||| |||||||||||||||||| || ||||||||||||||||    
T  35015958 ttagcaccatattaaataggcaccctcattgtggagtataatatatgg 35015911  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 16706757 - 16706687
Alignment:
Q  121 aatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 196  Q
    |||||||||||| |||||||||||    | |||||||||||||||||||| || || ||||||||| |||||||||    
T  16706757 aatggtgggtgcttcacctattta----gcaccacattaaataggcaccc-cattgtggagtataacatatgggtg 16706687  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 17680993 - 17680923
Alignment:
Q  121 aatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 196  Q
    |||||||||||| |||||||||||    | |||||||||||||||||||| || || ||||||||| |||||||||    
T  17680993 aatggtgggtgcttcacctattta----gcaccacattaaataggcaccc-cattgtggagtataacatatgggtg 17680923  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 15489406 - 15489461
Alignment:
Q  146 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||| |||||||||||||||||||| || || |||||||||||| |||||||||||    
T  15489406 ttagcaccacattaaataggcacccccattgtggagtataatatttgggtgtctat 15489461  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 32183771 - 32183860
Alignment:
Q  108 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||||||| | |||||||||||| ||| |||||||    | | || ||||||||||||||| || || ||||||||||||||||||| ||||    
T  32183771 ttagaccatccacaatggtgggtgcttcatctattta----gcatcatattaaataggcacccccattgtggagtataatatatgggtggctat 32183860  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 20969866 - 20969780
Alignment:
Q  107 attagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgt 197  Q
    ||||||||||| | |||||||||| | ||||||||    |||| |||||||||| ||||||||| || || | ||||||| ||||||||||    
T  20969866 attagaccatccacaatggtgggtacttcacctat----ttagcaccacattaagtaggcacccccattgtgaagtataacatatgggtgt 20969780  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 15135108 - 15135052
Alignment:
Q  146 ttagaaccacattaaataggcaccct-caatgcggagtataatatatgggtgtctat 201  Q
    |||| ||||||||||||||||||||| || || ||||||||||| ||||||| ||||    
T  15135108 ttagcaccacattaaataggcaccctccattgtggagtataatacatgggtggctat 15135052  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 8259572 - 8259482
Alignment:
Q  107 attagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    ||||||||||||| |||||||||||| ||| |||||||    | | || ||||||||||||||| || || || |||||||||||||||| ||||    
T  8259572 attagaccatctacaatggtgggtgcttcatctattta----gcatcatattaaataggcacccccattgtggggtataatatatgggtggctat 8259482  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 15342959 - 15342871
Alignment:
Q  108 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    ||||| |||||| |||||||||||| ||||||||    |||| ||||||||||||| |||||| || || ||||||||||| ||||||| ||||    
T  15342959 ttagatcatctacaatggtgggtgcttcacctat----ttagcaccacattaaataagcaccc-cattgtggagtataatacatgggtggctat 15342871  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 14624967 - 14625054
Alignment:
Q  110 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||||||| |||||||||||| ||||||||    |||| ||||||||||| |||||| |  | || |||| |||||||||||||| ||||    
T  14624967 agaccatctacaatggtgggtgcttcacctat----ttagcaccacattaaagaggcactcctattgtggagaataatatatgggtggctat 14625054  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 42693575 - 42693518
Alignment:
Q  140 atttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgt 197  Q
    ||||| |||| |||| ||||||||||||||  ||||| ||||||||| ||||||||||    
T  42693575 atttatttagcaccatattaaataggcacctccaatgtggagtataacatatgggtgt 42693518  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 48379474 - 48379558
Alignment:
Q  112 accatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||| | |||||||||||| ||||||||    |||| |||||||||||||||||||| || ||  |||||||||| ||||||| ||||    
T  48379474 accatccacaatggtgggtgcttcacctat----ttagcaccacattaaataggcaccc-cattgtagagtataatacatgggtggctat 48379558  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 9032812 - 9032748
Alignment:
Q  101 gcaacaattagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcacc 169  Q
    |||||| | |||||||| |||||||||||||| ||||||||||||     |||||||||||||||||||    
T  9032812 gcaacactaagaccatccaaaatggtgggtgcttcacctatttaa----caccacattaaataggcacc 9032748  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 19494762 - 19494817
Alignment:
Q  146 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||| |||| ||||||||||||||| || || ||||||||||||||||||| ||||    
T  19494762 ttagtaccatattaaataggcacccccattgtggagtataatatatgggtgactat 19494817  T

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Target: scaffold1940 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 584 - 634
Alignment:
Q  151 accacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||||||||||||||||| || || |||| |||||||||||||| ||||    
T  584 accacattaaataggcacccccattgtggagaataatatatgggtggctat 634  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 428283 - 428369
Alignment:
Q  110 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 201  Q
    |||||||| | |||||||||||| ||||||||    |||| |||| ||||||||||||||| || || ||||||||||| ||||||| ||||    
T  428283 agaccatccacaatggtgggtgcttcacctat----ttagcaccagattaaataggcaccc-cattgtggagtataatacatgggtggctat 428369  T

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