View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_12 (Length: 458)
Name: NF11089_high_12
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 30302417 - 30302851
Alignment:
| Q |
18 |
caatcaaattggatatgacaacacttgaatttctcaaggtatcatagatatgtttagcaactgcctgc--aaaacatgtttata----gcaagctcaagc |
111 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
30302417 |
caatcaaattggatattacaacacttgagtttctcaatgtaccatagatatgtttagcaacagcctgcttaaaacatgtttatatatagcaagctcaagc |
30302516 |
T |
|
| Q |
112 |
atttcaaaaacatgataaataaataaaggacttgggatgtaatttagatatacacacacctcatgtcctcttaatttcagctccatatctaagagccatt |
211 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30302517 |
atttcaaaaacatgaaaaataaataaaagacttgggatgtaatttagatatatacacacctcatgtcctcttaatttcagctccatatctaaaagccatt |
30302616 |
T |
|
| Q |
212 |
caataagaaaaacagtgaaagcatttctcttcctcttgattatattttgtgctttccagacaaattctaaggggttagataggctggcttggcacaactt |
311 |
Q |
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|| | |||||||||||||||| | ||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |
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| T |
30302617 |
cagtgagaaaaacagtgaaagtacttctcttcctcttgattattttctgtgctttccaaacaaaatctaaggggttagataggctgggttggcacaactt |
30302716 |
T |
|
| Q |
312 |
tgggattggtatatgtaagaaagaaatatgatttccccaaggagattttgaatcagcctttgtcatatcttggattgattggtaacttccaatgtttctg |
411 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30302717 |
tgggattggtatatgtaagaaagaaatatgattcccccaaggagattttgaatcagcctttgtcatatcttggattgattggtaacttccaatgttcctg |
30302816 |
T |
|
| Q |
412 |
gtactaagcaacaccaatcctgttgaatttgatgt |
446 |
Q |
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| T |
30302817 |
gtactgagcaacaccaatcctgtagaatttgatgt |
30302851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 30270085 - 30270517
Alignment:
| Q |
18 |
caatcaaattggatatgacaacacttgaatttctcaaggtatcatagatatgtttagcaactgcctgcaaaacatgtttata----gcaagctcaagcat |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30270085 |
caatcaaattggatatgacaacacttgaatttctcaaggtatcatagatatgtttagcaactgcctgcaaaacatgtttatatatagcaagctcaagcat |
30270184 |
T |
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| Q |
114 |
ttcaaaaacatgataaataaataaaggacttgggatgtaatttagatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattca |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30270185 |
ttcaaaaacatgaaaaataaataaaggacttgggatgtaatttagatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattca |
30270284 |
T |
|
| Q |
214 |
ataagaaaaacagtgaaagcatttctcttcctcttgattatattttgtgctttccagacaaattctaaggggttagataggctggcttggcacaactttg |
313 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| | ||| || |||||||||||||| ||||| | || ||||| | |
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| T |
30270285 |
ataagaaaaacagtaaaagtatttctcttcctcttgattattttttgtgctttccaaataaactccaaggggttagatagactggccttgcttaacttgg |
30270384 |
T |
|
| Q |
314 |
ggattggtatatgtaagaaagaaatatgatttccccaaggagattttgaatcagcctttgtcatatcttggattgattggtaacttccaatgtttctggt |
413 |
Q |
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|||||| || |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || || || |
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| T |
30270385 |
ggattgatacatgtaagaaagaaatatggttcccccaaggagattttgaatctgcctttgtcatatcttgaattgattggtaacttccaacattcctagt |
30270484 |
T |
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| Q |
414 |
actaagcaacaccaatcctgttgaatttgatgt |
446 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| |
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| T |
30270485 |
actaagcaataccaatcctgtggaatttgatgt |
30270517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 30282104 - 30281672
Alignment:
| Q |
18 |
caatcaaattggatatgacaacacttgaatttctcaaggtatcatagatatgtttagcaactgcctgcaaaacatgtttata----gcaagctcaagcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30282104 |
caatcaaattggatatgacaacacttgaatttctcaaggtatcatagatatgtttagcaactgcctgcaaaacatgtttatatatagcaagctcaagcat |
30282005 |
T |
|
| Q |
114 |
ttcaaaaacatgataaataaataaaggacttgggatgtaatttagatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattca |
213 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30282004 |
ttcaaaaacatgaaaaataaataaaggacttgggatgtaatttagatatacacacacctcatgtcctcttaatttcagctccatatctaagagccattca |
30281905 |
T |
|
| Q |
214 |
ataagaaaaacagtgaaagcatttctcttcctcttgattatattttgtgctttccagacaaattctaaggggttagataggctggcttggcacaactttg |
313 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| | ||| || |||||||||||||| ||||| | || ||||| | |
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| T |
30281904 |
ataagaaaaacagtaaaagtatttctcttcctcttgattattttttgtgctttccaaataaactccaaggggttagatagactggccttgcttaacttgg |
30281805 |
T |
|
| Q |
314 |
ggattggtatatgtaagaaagaaatatgatttccccaaggagattttgaatcagcctttgtcatatcttggattgattggtaacttccaatgtttctggt |
413 |
Q |
| |
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|||||| || |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || || || |
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| T |
30281804 |
ggattgatacatgtaagaaagaaatatggttcccccaaggagattttgaatctgcctttgtcatatcttgaattgattggtaacttccaacattcctagt |
30281705 |
T |
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| Q |
414 |
actaagcaacaccaatcctgttgaatttgatgt |
446 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| |
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| T |
30281704 |
actaagcaataccaatcctgtggaatttgatgt |
30281672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 159 - 446
Target Start/End: Original strand, 30263319 - 30263606
Alignment:
| Q |
159 |
atatacacacacctcatgtcctcttaatttcagctccatatctaagagccattcaataagaaaaacagtgaaagcatttctcttcctcttgattatattt |
258 |
Q |
| |
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||||| || |||||||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||| | ||||||||||||||||||| || |
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| T |
30263319 |
atatatacccacctcatgtcctcttaatttcagctgcatatctaaaagccattcagtgagaaaaacagtgaaagtacttctcttcctcttgattattttc |
30263418 |
T |
|
| Q |
259 |
tgtgctttccagacaaattctaaggggttagataggctggcttggcacaactttgggattggtatatgtaagaaagaaatatgatttccccaaggagatt |
358 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30263419 |
tgtgctttccaaacaaaatctaaggggttagataggctgggttggcttaactttgggattggtatatgtaagaaagaaatatgattcccccaaggagatt |
30263518 |
T |
|
| Q |
359 |
ttgaatcagcctttgtcatatcttggattgattggtaacttccaatgtttctggtactaagcaacaccaatcctgttgaatttgatgt |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |
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| T |
30263519 |
ttgaatcagcctttgtcatatcttggattgattggtaacttccaatgttcctggtactgagcagcaccaatcctgttgaatttgatgt |
30263606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 30262434 - 30262508
Alignment:
| Q |
18 |
caatcaaattggatatgacaacacttgaatttctcaaggtatcatagatatgtttagcaactgcctgcaaaacat |
92 |
Q |
| |
|
|||| |||||||| |||||||| ||||| |||||||| ||| |||| | ||||||||||||||||||||| |||| |
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|
| T |
30262434 |
caattaaattggacatgacaacgcttgagtttctcaatgtaccatatagatgtttagcaactgcctgcaacacat |
30262508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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