View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_high_13 (Length: 428)

Name: NF11089_high_13
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_high_13
NF11089_high_13
[»] chr2 (2 HSPs)
chr2 (11-331)||(18031190-18031506)
chr2 (381-421)||(18031100-18031140)
[»] chr4 (1 HSPs)
chr4 (156-319)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (157-331)||(29642020-29642198)
chr3 (237-287)||(4803977-4804027)
chr3 (240-287)||(10535703-10535750)
chr3 (120-154)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (256-325)||(22002453-22002522)
chr7 (11-136)||(22002144-22002269)
[»] chr8 (2 HSPs)
chr8 (231-327)||(32309433-32309529)
chr8 (14-151)||(32309130-32309266)
[»] chr6 (5 HSPs)
chr6 (231-327)||(33364663-33364759)
chr6 (14-151)||(33364360-33364496)
chr6 (119-154)||(22208490-22208525)
chr6 (112-154)||(16592721-16592763)
chr6 (102-152)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (231-327)||(30330131-30330227)
chr1 (14-151)||(30330394-30330530)
chr1 (240-287)||(25626139-25626186)
chr1 (120-154)||(9934245-9934279)
chr1 (102-152)||(24208117-24208167)
chr1 (102-152)||(45027897-45027947)
chr1 (102-152)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (240-287)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 18031506 - 18031190
Alignment:
Q  11 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaata 110  Q
    ||||||||||  ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||     |||||||||    
T  18031506 cagagacaccagaagactttaagttgagaataggagggacgtttttggtaaaaaaattgtatttggtgtttgaagagctaattgtt-----ggaagaata 18031412  T
Q  111 attaacaaataagtagccatatgaagagcatgatgccaaaatgatgtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttacattatga 210  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||    
T  18031411 attaacaaataagtagtcatatgaagagcatgatgtcaaaaagatgtgaggtgtggggacaagaaaattggaagctcattccattatatttacattatga 18031312  T
Q  211 aaagaa-tattgtcatattgttttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 309  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18031311 aaagaagtattgtcatattcttttctgttatcacattgaaaacattttatatctcttttaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 18031212  T
Q  310 aataagcttgagatttatgtgc 331  Q
    ||||||||||||||||||||||    
T  18031211 aataagcttgagatttatgtgc 18031190  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 18031140 - 18031100
Alignment:
Q  381 gagtaacgatgaccaccaggaccaagagttgctgatgtcca 421  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  18031140 gagtaacgatgaccaccatgaccaagagttgttgatgtcca 18031100  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 156 - 319
Target Start/End: Complemental strand, 55156642 - 55156474
Alignment:
Q  156 gtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaa 250  Q
    |||||||||| | ||||||||||   |||||||||||||| ||||||||    ||||  |||||| |||||||||||| ||||| |||||||| ||||||    
T  55156642 gtgaggtgtgaggacaagaaaaccagaagctcattccattttgtttacagaaattatagaaagaagtattgtcatattcttttccgttatcacattgaaa 55156543  T
Q  251 acattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttg 319  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  55156542 acattttatatctctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaataaacttg 55156474  T

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Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 157 - 331
Target Start/End: Complemental strand, 29642198 - 29642020
Alignment:
Q  157 tgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaata-ttgtcatattgttttctgttatcacgttgaaaa 251  Q
    ||||||||| | |||||||||||| |||||| ||||||| ||||||||    ||||| |||||| | |||||||||| ||||| |||||||| |||||||    
T  29642198 tgaggtgtgaggacaagaaaactggaagctc-ttccattttgtttacaaagattatggaaagaagaattgtcatattattttccgttatcacattgaaaa 29642100  T
Q  252 cattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 331  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  29642099 cattgtatatctcttttaaattgtgttttaatgtgattgcgaaaataaagaaaagtggaaaaagcttgagatttgtgtgc 29642020  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 4803977 - 4804027
Alignment:
Q  237 ttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 287  Q
    ||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  4803977 ttatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 4804027  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 10535703 - 10535750
Alignment:
Q  240 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 287  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  10535703 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 10535750  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 48101527 - 48101561
Alignment:
Q  120 taagtagccatatgaagagcatgatgccaaaatga 154  Q
    ||||||||||| |||||||||||||||||||||||    
T  48101527 taagtagccatttgaagagcatgatgccaaaatga 48101561  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 22002453 - 22002522
Alignment:
Q  256 ttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagattt 325  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22002453 ttatatctctttcaaattttgttttaatttgattaggaaaatgaataaaagtggaataagcttgagattt 22002522  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 22002144 - 22002269
Alignment:
Q  11 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgt-ttggttggaagaat 109  Q
    ||||||||||| | ||||||||| ||||||| ||||| | || ||| | |||  ||| ||| |||| |||| |||||||| || | ||||||||||||||    
T  22002144 cagagacacccgatgactttaagatgagaataggaggaa-atattttgataaggaatcgtagttggggttttaagagctacttatgttggttggaagaat 22002242  T
Q  110 aattaacaaataagtagccatatgaag 136  Q
    | ||||||||||||| | |||||||||    
T  22002243 atttaacaaataagtggtcatatgaag 22002269  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 32309433 - 32309529
Alignment:
Q  231 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 327  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||| |||| | |||||| |||||||    
T  32309433 tttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagcttgtgatttat 32309529  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 32309130 - 32309266
Alignment:
Q  14 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 113  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  32309130 agacatccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 32309228  T
Q  114 aacaaataagtagccatatgaagagcatgatgccaaaa 151  Q
    || | |||||||||||| ||||| || |||||||||||    
T  32309229 aagagataagtagccatttgaagtgcgtgatgccaaaa 32309266  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 33364663 - 33364759
Alignment:
Q  231 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 327  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  33364663 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 33364759  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 33364360 - 33364496
Alignment:
Q  14 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 113  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  33364360 agacaaccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 33364458  T
Q  114 aacaaataagtagccatatgaagagcatgatgccaaaa 151  Q
    || | |||||||||||| ||||| || |||||||||||    
T  33364459 aagagataagtagccatttgaagtgcgtgatgccaaaa 33364496  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 22208490 - 22208525
Alignment:
Q  119 ataagtagccatatgaagagcatgatgccaaaatga 154  Q
    |||||||||||| |||||||||||||||||||||||    
T  22208490 ataagtagccatttgaagagcatgatgccaaaatga 22208525  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 16592763 - 16592721
Alignment:
Q  112 ttaacaaataagtagccatatgaagagcatgatgccaaaatga 154  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  16592763 ttaacatataagttgccatgtgaagagcatgatgccaaaatga 16592721  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 33164183 - 33164133
Alignment:
Q  102 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 152  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  33164183 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 33164133  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 30330227 - 30330131
Alignment:
Q  231 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 327  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  30330227 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 30330131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 30330530 - 30330394
Alignment:
Q  14 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 113  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  30330530 agacagccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 30330432  T
Q  114 aacaaataagtagccatatgaagagcatgatgccaaaa 151  Q
    || | |||||||||||| ||||| || |||||||||||    
T  30330431 aagagataagtagccatttgaagtgcgtgatgccaaaa 30330394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 25626139 - 25626186
Alignment:
Q  240 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 287  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  25626139 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 25626186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 9934245 - 9934279
Alignment:
Q  120 taagtagccatatgaagagcatgatgccaaaatga 154  Q
    ||||||||||| |||||||||||||||||||||||    
T  9934245 taagtagccatttgaagagcatgatgccaaaatga 9934279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 24208167 - 24208117
Alignment:
Q  102 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 152  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  24208167 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 24208117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 45027947 - 45027897
Alignment:
Q  102 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 152  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45027947 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45027897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 45032795 - 45032745
Alignment:
Q  102 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 152  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45032795 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45032745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 89687 - 89640
Alignment:
Q  240 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 287  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  89687 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 89640  T

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