View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_high_16 (Length: 406)

Name: NF11089_high_16
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_high_16
NF11089_high_16
[»] chr2 (4 HSPs)
chr2 (1-399)||(15116394-15116808)
chr2 (25-54)||(18255946-18255975)
chr2 (25-54)||(30717461-30717490)
chr2 (6-54)||(37419823-37419871)
[»] scaffold0008 (1 HSPs)
scaffold0008 (4-54)||(263303-263353)
[»] chr7 (4 HSPs)
chr7 (4-54)||(9778572-9778622)
chr7 (4-54)||(5409773-5409823)
chr7 (4-54)||(29763131-29763181)
chr7 (25-53)||(8842282-8842310)
[»] chr3 (7 HSPs)
chr3 (4-54)||(55401142-55401192)
chr3 (7-54)||(1389908-1389955)
chr3 (4-54)||(15999952-16000002)
chr3 (4-54)||(17276794-17276844)
chr3 (6-55)||(24204982-24205031)
chr3 (6-55)||(25775576-25775625)
chr3 (4-56)||(4987220-4987272)
[»] chr1 (6 HSPs)
chr1 (5-54)||(1704937-1704986)
chr1 (7-54)||(16297223-16297270)
chr1 (25-54)||(48415668-48415697)
chr1 (10-54)||(21365994-21366038)
chr1 (10-54)||(22515829-22515873)
chr1 (7-55)||(42359390-42359438)
[»] chr4 (6 HSPs)
chr4 (7-54)||(20633541-20633588)
chr4 (4-51)||(30838288-30838335)
chr4 (4-54)||(3947703-3947753)
chr4 (5-55)||(22440558-22440608)
chr4 (4-54)||(23292928-23292978)
chr4 (4-54)||(30982809-30982859)
[»] scaffold0361 (1 HSPs)
scaffold0361 (4-54)||(14594-14644)
[»] chr8 (2 HSPs)
chr8 (8-54)||(13397622-13397668)
chr8 (6-55)||(44067596-44067645)
[»] chr6 (3 HSPs)
chr6 (4-54)||(8776910-8776960)
chr6 (4-54)||(31384997-31385047)
chr6 (25-54)||(10649376-10649405)
[»] scaffold0380 (1 HSPs)
scaffold0380 (25-54)||(8689-8718)
[»] scaffold0306 (1 HSPs)
scaffold0306 (27-55)||(13496-13524)
[»] scaffold0152 (1 HSPs)
scaffold0152 (27-55)||(21803-21831)
[»] chr5 (1 HSPs)
chr5 (10-54)||(39698625-39698669)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 15116808 - 15116394
Alignment:
Q  1 cggcacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcattacattggc-------------------atatcatggaaacattta 81  Q
    |||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||                   |||| ||| |||||||||    
T  15116808 cggcacgtgtccgataccaagacgcgcctaattcgagaagtgtctgtgcttcattacattggcttagtaaacattcttatatatattatgtaaacattta 15116709  T
Q  82 catctccatatacttgatgcacactagaatacagccaaagaggtgttaaattcaagactagctgacaaaataatttatgatagttgtttgaaatctagta 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15116708 catctccatatacttgatgcacactagaatacagccaaagaggtgttaaattcaagactagctgacaaaataatttatgatagttgtttgaaatctagta 15116609  T
Q  182 nnnnnnnnnnnatttcaaagttatctgcttattttcttcggtgatatattcatttcgttccaatctactaatagtttcagtgaaaaaacaatttctttga 281  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15116608 tttttttt---atttcaaagttatctgcttattttcttcggtgatacattcatttcgttccaatctactaatagtttcagtgaaaaaacaatttctttga 15116512  T
Q  282 atggcatctacaaaaggcatggatgactgtgaaccacaaaaaagctattggagatggagcaaacaagatttcttgccagaggaatcctttcaaagctgga 381  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15116511 atggcatccacaaaaggcatggatgactgtgaaccacaaaaaagctattggagatggagcaaacaagatttcttgccagaggaatcctttcaaagctgga 15116412  T
Q  382 acaactatgtctctgctc 399  Q
    |||||||||| |||||||    
T  15116411 acaactatgtttctgctc 15116394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 18255975 - 18255946
Alignment:
Q  25 cgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||||||||||||||||||||||    
T  18255975 cgcctaatccaaggagtgtccgtgcttcat 18255946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 30717490 - 30717461
Alignment:
Q  25 cgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||||||||||||||||||||||    
T  30717490 cgcctaatccaaggagtgtccgtgcttcat 30717461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 37419823 - 37419871
Alignment:
Q  6 cgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||| |||  ||| |||||||||| |||||||||||||||||||    
T  37419823 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 37419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 263353 - 263303
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||| |||||    
T  263353 cacgtgttcgataccaagacacgcctaatccgaggagtgtccgtggttcat 263303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 9778572 - 9778622
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| |||  ||| ||||||||||||||||||||||||||||||    
T  9778572 cacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcat 9778622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 5409823 - 5409773
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| |||  ||| |||||||||| |||||||||||||||||||    
T  5409823 cacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 5409773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 29763181 - 29763131
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| | || ||| |||||||||| |||||||||||||||||||    
T  29763181 cacgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcat 29763131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 8842310 - 8842282
Alignment:
Q  25 cgcctaatccaaggagtgtccgtgcttca 53  Q
    |||||||||||||||||||||||||||||    
T  8842310 cgcctaatccaaggagtgtccgtgcttca 8842282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 55401142 - 55401192
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| ||| |||| |||||||||| |||||||||||||||||||    
T  55401142 cacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 55401192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 1389908 - 1389955
Alignment:
Q  7 gtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    |||||||| |||| |||  |||||||||||||||||||||||||||||    
T  1389908 gtgtccgacaccaggacatgcctaatccaaggagtgtccgtgcttcat 1389955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 16000002 - 15999952
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| |||  ||| ||||||||||||||||||||||||| ||||    
T  16000002 cacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcat 15999952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 17276794 - 17276844
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| ||| |||||| |||||||| || ||||||||||||||||    
T  17276794 cacgtgtccgacaccgagacgcacctaatccgagaagtgtccgtgcttcat 17276844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 24205031 - 24204982
Alignment:
Q  6 cgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcatt 55  Q
    ||||||||| |||| ||| |||||||| | ||||||||||||||||||||    
T  24205031 cgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcatt 24204982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 25775576 - 25775625
Alignment:
Q  6 cgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcatt 55  Q
    ||||||||| |||| ||| |||||||||| |||||||| |||||||||||    
T  25775576 cgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcatt 25775625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 4987272 - 4987220
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcatta 56  Q
    ||||||||||| |||  ||| |||||||||| |||||||||||| ||||||||    
T  4987272 cacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcatta 4987220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 1704986 - 1704937
Alignment:
Q  5 acgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    |||||||||| ||| |||| ||||||||||||||||||||| ||||||||    
T  1704986 acgtgtccgacaccgagacacgcctaatccaaggagtgtccatgcttcat 1704937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 16297270 - 16297223
Alignment:
Q  7 gtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    |||||||| |||| ||| |||||||||| |||||||||||||||||||    
T  16297270 gtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 48415697 - 48415668
Alignment:
Q  25 cgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||||||||||||||||||||||    
T  48415697 cgcctaatccaaggagtgtccgtgcttcat 48415668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 21366038 - 21365994
Alignment:
Q  10 tccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||||    
T  21366038 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 21365994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 22515873 - 22515829
Alignment:
Q  10 tccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||||    
T  22515873 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 22515829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 42359438 - 42359390
Alignment:
Q  7 gtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcatt 55  Q
    |||||||| |||  ||| |||||||||| ||||||||||||||||||||    
T  42359438 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatt 42359390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 20633541 - 20633588
Alignment:
Q  7 gtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||| || |||||||| ||||||||||||||||||| ||||||||||    
T  20633541 gtgtcggacaccaagacacgcctaatccaaggagtgttcgtgcttcat 20633588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 30838288 - 30838335
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgctt 51  Q
    ||||||||||| |||||||| ||||||| || ||||||||||||||||    
T  30838288 cacgtgtccgacaccaagacacgcctaacccgaggagtgtccgtgctt 30838335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 3947753 - 3947703
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| |||| ||| | |||||||| |||||||||||||||||||    
T  3947753 cacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcat 3947703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 22440608 - 22440558
Alignment:
Q  5 acgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcatt 55  Q
    |||||||||| || | ||| |||||||||| ||||||||||||||||||||    
T  22440608 acgtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcatt 22440558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 23292978 - 23292928
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| |||  ||| |||||||||| |||||||||||||||||||    
T  23292978 cacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 23292928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 30982859 - 30982809
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| |||  ||| |||||||||||| |||||||||||||||||    
T  30982859 cacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcat 30982809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 14594 - 14644
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| ||| |||| ||||||||| ||||||||| ||||||||||    
T  14594 cacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcat 14644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 13397622 - 13397668
Alignment:
Q  8 tgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||| ||| |||| |||||||| |||||||||||||||||||||    
T  13397622 tgtccgacaccgagacacgcctaattcaaggagtgtccgtgcttcat 13397668  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 44067596 - 44067645
Alignment:
Q  6 cgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcatt 55  Q
    ||||||||| |||| ||| |||||||| | ||||||||||||||||||||    
T  44067596 cgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcatt 44067645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 8776960 - 8776910
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||| ||| |||| | |||||||| |||||||||||||||||||    
T  8776960 cacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcat 8776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 31384997 - 31385047
Alignment:
Q  4 cacgtgtccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||| | |||  ||| ||||||||||||||||||||||||||||||    
T  31384997 cacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttcat 31385047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 10649376 - 10649405
Alignment:
Q  25 cgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||||||||||||||||||||||    
T  10649376 cgcctaatccaaggagtgtccgtgcttcat 10649405  T

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Target: scaffold0380 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 8689 - 8718
Alignment:
Q  25 cgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||||||||||||||||||||||||||||    
T  8689 cgcctaatccaaggagtgtccgtgcttcat 8718  T

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Target: scaffold0306 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 13496 - 13524
Alignment:
Q  27 cctaatccaaggagtgtccgtgcttcatt 55  Q
    |||||||||||||||||||||||||||||    
T  13496 cctaatccaaggagtgtccgtgcttcatt 13524  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 21831 - 21803
Alignment:
Q  27 cctaatccaaggagtgtccgtgcttcatt 55  Q
    |||||||||||||||||||||||||||||    
T  21831 cctaatccaaggagtgtccgtgcttcatt 21803  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 39698625 - 39698669
Alignment:
Q  10 tccgataccaagacgcgcctaatccaaggagtgtccgtgcttcat 54  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||||    
T  39698625 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 39698669  T

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