View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_18 (Length: 395)
Name: NF11089_high_18
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 5303211 - 5302859
Alignment:
| Q |
17 |
acaaacacctaaattttataccactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaa |
116 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303211 |
acaaacacctaaattttataccactcata----gttta-tgttgtattgatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaa |
5303117 |
T |
|
| Q |
117 |
ttgatgtcttaa-tgttttcttctctttttggttgctggtaattaatatatttgacttacatacatctcatcatttttctttattcagccaccatctaat |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303116 |
ttgatgtcttaaatgttttcttctctttttggttgctggtaat----atatttgacttacatacatctcatcatttttctttattcagccaccatctaat |
5303021 |
T |
|
| Q |
216 |
tgcttcacatgtccaaaccaaatcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303020 |
tgcttcacatgtccaaaccaaatcatctaagtccaaattcattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattga |
5302925 |
T |
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| Q |
316 |
aattcaactgtannnnnnnattaagaggtttttagacctatcgttgcctcagtattaacttcatct |
381 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5302924 |
aattcaactgtatttttttagtaagaggtttttagacctatcgttgcctcagtattagcttcatct |
5302859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 54728818 - 54728522
Alignment:
| Q |
17 |
acaaacacctaaattttataccactcatatatagtttaatgttgtattcatcgatatttgtcgaggatgactctgatgaagtaattttcttattgctaaa |
116 |
Q |
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|
||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728818 |
acaaacacctaaattttataccactcata----gttta-tgttgtattgatctatatttgtcgaggatgactctgatgaagtaattttcttattgctaaa |
54728724 |
T |
|
| Q |
117 |
ttgatgtcttaatgttttcttctctttttggttgctggtaattaatatatttgacttacatacatctcatcatttttctttattcagccaccatctaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728723 |
ttgatgtcttaatgttttcttctctttttggttgctg-----taatatatttgacttacatacatctcatcatttttctttattcagccaccatctaatt |
54728629 |
T |
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| Q |
217 |
gcttcacatgtccaaaccaaatcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaa |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728628 |
gcttcacatgtccaaaccaaatcatctaagttcaaattcattagt----attttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaa |
54728533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 54728230 - 54728196
Alignment:
| Q |
347 |
ttagacctatcgttgcctcagtattaacttcatct |
381 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
54728230 |
ttagacctatcgttgcctcagtattagcttcatct |
54728196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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