View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_high_2 (Length: 724)

Name: NF11089_high_2
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_high_2
NF11089_high_2
[»] chr8 (7 HSPs)
chr8 (291-675)||(38186511-38186900)
chr8 (102-247)||(38296980-38297124)
chr8 (108-173)||(38553096-38553161)
chr8 (18-74)||(11420461-11420517)
chr8 (198-245)||(19450391-19450438)
chr8 (198-245)||(19530638-19530685)
chr8 (108-171)||(40931562-40931625)
[»] chr7 (4 HSPs)
chr7 (107-299)||(49036483-49036677)
chr7 (109-172)||(30656328-30656391)
chr7 (26-62)||(7192353-7192389)
chr7 (18-62)||(39990621-39990665)
[»] chr5 (6 HSPs)
chr5 (102-238)||(31034966-31035102)
chr5 (102-298)||(24018268-24018466)
chr5 (21-74)||(11969732-11969785)
chr5 (114-166)||(40086926-40086978)
chr5 (18-59)||(3945230-3945271)
chr5 (18-51)||(34303558-34303591)
[»] scaffold0008 (1 HSPs)
scaffold0008 (107-308)||(59537-59740)
[»] chr3 (3 HSPs)
chr3 (107-238)||(47476462-47476593)
chr3 (161-238)||(20700620-20700697)
chr3 (17-79)||(35965385-35965447)
[»] chr2 (1 HSPs)
chr2 (17-63)||(8563124-8563170)
[»] chr1 (3 HSPs)
chr1 (25-62)||(8723325-8723362)
chr1 (108-157)||(19472047-19472096)
chr1 (17-74)||(38470961-38471018)
[»] chr6 (5 HSPs)
chr6 (15-62)||(29178360-29178407)
chr6 (18-80)||(1451692-1451754)
chr6 (18-80)||(1456945-1457007)
chr6 (25-74)||(17294036-17294085)
chr6 (109-166)||(24629734-24629791)
[»] chr4 (2 HSPs)
chr4 (33-62)||(10214378-10214407)
chr4 (18-59)||(26509676-26509717)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 291 - 675
Target Start/End: Original strand, 38186511 - 38186900
Alignment:
Q  291 ttgtcttgcaagatggtgcttgtgttgtagttgtttgtgttgtcaaggggcagcaggttgtgtggaggtgcgatttcggtagtgcaggcaggtcttttgc 390  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38186511 ttgtcttgcaaggtggtgcttgtgttctagttgtttgtgttgtcaaggggtagcaggttgtgtggaggtgcgatttcggtagtgcaggcaggtcttttgc 38186610  T
Q  391 ggtttccatttgatttttatggatgttttgcttggagaagctttttcttggttggctttgagttttattcctatcatttcctccttggtctgcgactgtt 490  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  38186611 ggtttccatttgattttaatggatgttttgcttggagtagctttttcttggttggttttgagttttattcctagcatttcctccttggtctgcgactgtt 38186710  T
Q  491 gttttgataacaaagggactgttttgcgctac-----caggtttttggtgcattgnnnnnnnggttttgtttggcttcggcagcttggaggtgcttggca 585  Q
    |||||||||||||| ||| |||||||||||||     ||||||||||||||||||       ||||||||||||||||||||||||||||||||| | ||    
T  38186711 gttttgataacaaatggattgttttgcgctaccagcacaggtttttggtgcattgtttttttggttttgtttggcttcggcagcttggaggtgctcgaca 38186810  T
Q  586 atttttagtgaggcagaggtgtgcttcaggagtcagtgctgattaggcctggctgtgtgtatatgccgatctcactaattttggggatgg 675  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38186811 atttttagtgaggcaggggtgtgcttcaggagtcagtgctgattaggcctggctgtgtgtatatgccgacctcactaattttggggatgg 38186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 38297124 - 38296980
Alignment:
Q  102 ggttgttggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaaggggtcaaattttgaggtggaggaattggttg 201  Q
    |||| ||||||||||||||| || |||||||||||  ||||| |   ||| |||||||||||||| ||||||   |||||||| ||||| |||| |||||    
T  38297124 ggtttttggttaatttggcatactaccatttgggtgatgtggaagaagagaaatgataagatttttaaggggattaattttgacgtggatgaat-ggttg 38297026  T
Q  202 aggagattaaggtgttgtcttagaggtggatgttggacaggactca 247  Q
    | ||||| ||||||||||||| |||||||||| |||| ||||||||    
T  38297025 aagagataaaggtgttgtcttggaggtggatgctggataggactca 38296980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 38553096 - 38553161
Alignment:
Q  108 tggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaagggg 173  Q
    ||||| ||||||||||| || |||||||| |||||| |||| ||||||||||||||||||||||||    
T  38553096 tggttgatttggcacactacgatttgggtgttgtggaaagctaggaatgataagattttcaagggg 38553161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 11420517 - 11420461
Alignment:
Q  18 tttttcactttcaagtatacccttaaataaatttgactataagaaaactattttgtt 74  Q
    |||||||||||||| |||||  ||||||||||||||||||||||| | |||||||||    
T  11420517 tttttcactttcaattatacatttaaataaatttgactataagaatattattttgtt 11420461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 19450438 - 19450391
Alignment:
Q  198 gttgaggagattaaggtgttgtcttagaggtggatgttggacaggact 245  Q
    ||||| ||||||||||||||||| | ||||||||||||||| ||||||    
T  19450438 gttgaagagattaaggtgttgtcgtggaggtggatgttggagaggact 19450391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 19530638 - 19530685
Alignment:
Q  198 gttgaggagattaaggtgttgtcttagaggtggatgttggacaggact 245  Q
    ||||| ||||||||||||||||| | ||||||||||||||| ||||||    
T  19530638 gttgaagagattaaggtgttgtcgtggaggtggatgttggagaggact 19530685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 40931625 - 40931562
Alignment:
Q  108 tggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaagg 171  Q
    ||||| ||||||||||| || ||||| ||||||||| |||| |||||||| || ||||||||||    
T  40931625 tggttgatttggcacactacgatttgagttttgtggaaagctaggaatgacaaaattttcaagg 40931562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 107 - 299
Target Start/End: Complemental strand, 49036677 - 49036483
Alignment:
Q  107 ttggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaaggggtcaaattttgaggtggaggaattggttgaggag 206  Q
    ||||||||||||||||||||||||||||||||||||| || | |||||| |||  |||||||| ||||||| | |||| ||||| || ||||| ||||||    
T  49036677 ttggttaatttggcacacaaccatttgggttttgtggaaatcaaggaattatagcattttcaacgggtcaattattgatgtggacgagttggtcgaggag 49036578  T
Q  207 attaaggtgttgtcttagaggtggatgttggacaggactcacactccta--agtcttttttacgagtggtgttggaatcctaagctttgtcttgc 299  Q
     |||||||| |||| | ||||||| ||||||| ||||||||||| || |   |||||||||| || |||||||||||||||||||||||||||||    
T  49036577 gttaaggtgatgtcgtggaggtggttgttggagaggactcacacgccgacttgtcttttttatgaatggtgttggaatcctaagctttgtcttgc 49036483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 30656391 - 30656328
Alignment:
Q  109 ggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaaggg 172  Q
    |||||||||||||||| || |||||||| |||||| ||||||| |||||||| || ||||||||    
T  30656391 ggttaatttggcacactacgatttgggtcttgtggaaagcgagaaatgataaaatcttcaaggg 30656328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 7192389 - 7192353
Alignment:
Q  26 tttcaagtatacccttaaataaatttgactataagaa 62  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7192389 tttcaattatacccttaaataaatttgactataagaa 7192353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 39990665 - 39990621
Alignment:
Q  18 tttttcactttcaagtatacccttaaataaatttgactataagaa 62  Q
    |||||||||||||  |||||||||||||||||||| |||||||||    
T  39990665 tttttcactttcagttatacccttaaataaatttgcctataagaa 39990621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 31035102 - 31034966
Alignment:
Q  102 ggttgttggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaaggggtcaaattttgaggtggaggaattggttg 201  Q
    |||| ||||||||||| ||||||||| ||||||||||||||| || |||| ||||| | ||||||||||||   ||| ||||||||||||||||||||||    
T  31035102 ggtttttggttaatttagcacacaactatttgggttttgtggaaaacgagaaatgacatgattttcaagggaataaactttgaggtggaggaattggttg 31035003  T
Q  202 aggagattaaggtgttgtcttagaggtggatgttgga 238  Q
      ||||||||||||||||||| ||||| |||||||||    
T  31035002 tagagattaaggtgttgtcttggaggtagatgttgga 31034966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 298
Target Start/End: Original strand, 24018268 - 24018466
Alignment:
Q  102 ggttgttggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaaggggtcaaattttgaggtggaggaattggttg 201  Q
    |||| ||||||||| |||||||| |||||||||||  ||||| |   ||| || |  |||||||| ||||||   |||||||| ||||| ||||||||||    
T  24018268 ggtttttggttaatatggcacactaccatttgggtgatgtggaagaagagaaacggcaagatttttaaggggattaattttgatgtggatgaattggttg 24018367  T
Q  202 aggagattaaggtgttgtcttagaggtggatgttggacaggactca----cactcctaagtcttttttacgagtggtgttggaatcctaagctttgtctt 297  Q
    ||||||| ||||||| ||||| ||||||||||||||| || |||||    |  ||||  ||||||||||||| |||||||||||||| |  |||||||||    
T  24018368 aggagataaaggtgtcgtcttggaggtggatgttggatagaactcatttcccgtcct--gtcttttttacgaatggtgttggaatccaagactttgtctt 24018465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 11969732 - 11969785
Alignment:
Q  21 ttcactttcaagtatacccttaaataaatttgactataagaaaactattttgtt 74  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  11969732 ttcactttcaattatacccttaaataaatttgactataagaaaactaatttgtt 11969785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 40086926 - 40086978
Alignment:
Q  114 atttggcacacaaccatttgggttttgtggtaagcgaggaatgataagatttt 166  Q
    |||||| |||||||||||||||| |||||| |||| ||||||||||| |||||    
T  40086926 atttggaacacaaccatttgggtattgtggaaagctaggaatgataaaatttt 40086978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3945271 - 3945230
Alignment:
Q  18 tttttcactttcaagtatacccttaaataaatttgactataa 59  Q
    |||||||||||||| ||||| |||||| ||||||||||||||    
T  3945271 tttttcactttcaactatactcttaaacaaatttgactataa 3945230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 34303558 - 34303591
Alignment:
Q  18 tttttcactttcaagtatacccttaaataaattt 51  Q
    |||||||||||||| |||||||||||||||||||    
T  34303558 tttttcactttcaattatacccttaaataaattt 34303591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 107 - 308
Target Start/End: Original strand, 59537 - 59740
Alignment:
Q  107 ttggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaaggggtcaaattttgaggtggaggaattggttgaggag 206  Q
    ||||||||||  ||||||||||||||||||| ||||| ||  ||| ||||| |||||||| ||||||  ||||||| ||||||| |||||||| || ||     
T  59537 ttggttaattcagcacacaaccatttgggttatgtggaaaaagagaaatgacaagatttttaaggggataaattttaaggtggatgaattggtcgaagaa 59636  T
Q  207 attaaggtgttgtcttagaggtggatgttggacaggactcacactcc--taagtcttttttacgagtggtgttggaatcctaagctttgtcttgcaagat 304  Q
    |||||||||||||||| |||||||||||||||  |||||||||| ||     ||||||||  ||| |||||||||||||| |  |||||||| | |||||    
T  59637 attaaggtgttgtcttggaggtggatgttggaatggactcacaccccatcttgtctttttagcgaatggtgttggaatccaagactttgtctcgaaagat 59736  T
Q  305 ggtg 308  Q
    ||||    
T  59737 ggtg 59740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 47476462 - 47476593
Alignment:
Q  107 ttggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagattttcaaggggtcaaattttgaggtggaggaattggttgaggag 206  Q
    ||||||||||||||||||||| ||||||||||||||| |   ||| ||||||||||| |||||||||   |||||||||||||||||||||||||||||     
T  47476462 ttggttaatttggcacacaacgatttgggttttgtggaataggagaaatgataagatcttcaaggggaggaattttgaggtggaggaattggttgaggaa 47476561  T
Q  207 attaaggtgttgtcttagaggtggatgttgga 238  Q
    || || ||||| |||| ||| |||||||||||    
T  47476562 atcaaagtgttatcttggagatggatgttgga 47476593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 20700620 - 20700697
Alignment:
Q  161 gattttcaaggggtcaaattttgaggtggaggaattggttgaggagattaaggtgttgtcttagaggtggatgttgga 238  Q
    |||||||||||||  ||||| || || ||||||  || | || ||||||||||||||||||||||| |||||||||||    
T  20700620 gattttcaaggggctaaattgtgtggcggaggatgtgatagaagagattaaggtgttgtcttagagatggatgttgga 20700697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 35965385 - 35965447
Alignment:
Q  17 ttttttcactttcaagtatacccttaaataaatttgactataagaaaactattttgttaatgt 79  Q
    |||| |||||||||| ||||| ||||||||| ||||||||||| ||  |||||||||| ||||    
T  35965385 ttttctcactttcaattatactcttaaataagtttgactataaaaatgctattttgttgatgt 35965447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 8563170 - 8563124
Alignment:
Q  17 ttttttcactttcaagtatacccttaaataaatttgactataagaaa 63  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  8563170 ttttttctctttcaattatacccttaaataaatttgactataagaaa 8563124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 8723362 - 8723325
Alignment:
Q  25 ctttcaagtatacccttaaataaatttgactataagaa 62  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8723362 ctttcaattatacccttaaataaatttgactataagaa 8723325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 19472047 - 19472096
Alignment:
Q  108 tggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatga 157  Q
    ||||||||||||||||||||||| |||  ||||||| ||||||| |||||    
T  19472047 tggttaatttggcacacaaccatgtggactttgtggaaagcgagaaatga 19472096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 38470961 - 38471018
Alignment:
Q  17 ttttttcactttcaagtatacccttaaataaatttgactataagaaaactattttgtt 74  Q
    |||||||| |||||| ||||| |||||||||||| |||||||| ||  ||||||||||    
T  38470961 ttttttcaatttcaattatactcttaaataaattggactataaaaatgctattttgtt 38471018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 29178360 - 29178407
Alignment:
Q  15 aattttttcactttcaagtatacccttaaataaatttgactataagaa 62  Q
    ||||||||||||||  | |||||||||||||||||||| |||||||||    
T  29178360 aattttttcacttttcaatatacccttaaataaatttgtctataagaa 29178407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 1451754 - 1451692
Alignment:
Q  18 tttttcactttcaagtatacccttaaataaatttgactataagaaaactattttgttaatgtc 80  Q
    |||||||||||||| |||||||||||||||| ||  |||||| ||  |||| |||||||||||    
T  1451754 tttttcactttcaattatacccttaaataaaatttcctataataatgctatattgttaatgtc 1451692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 1457007 - 1456945
Alignment:
Q  18 tttttcactttcaagtatacccttaaataaatttgactataagaaaactattttgttaatgtc 80  Q
    |||||||||||||| |||||||||||||||| ||  |||||| ||  |||| |||||||||||    
T  1457007 tttttcactttcaattatacccttaaataaaatttcctataataatgctatattgttaatgtc 1456945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 17294085 - 17294036
Alignment:
Q  25 ctttcaagtatacccttaaataaatttgactataagaaaactattttgtt 74  Q
    |||||||  ||||||||||||||||| |||||||||||  ||||||||||    
T  17294085 ctttcaataatacccttaaataaattagactataagaatgctattttgtt 17294036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 24629734 - 24629791
Alignment:
Q  109 ggttaatttggcacacaaccatttgggttttgtggtaagcgaggaatgataagatttt 166  Q
    |||||||||||| |||||| |||||||||||| || ||| || |||| ||||||||||    
T  24629734 ggttaatttggctcacaactatttgggttttgcggaaagtgaagaattataagatttt 24629791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 10214407 - 10214378
Alignment:
Q  33 tatacccttaaataaatttgactataagaa 62  Q
    ||||||||||||||||||||||||||||||    
T  10214407 tatacccttaaataaatttgactataagaa 10214378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 26509717 - 26509676
Alignment:
Q  18 tttttcactttcaagtatacccttaaataaatttgactataa 59  Q
    |||||||||||||| ||||||||| ||||||||||| |||||    
T  26509717 tttttcactttcaattataccctttaataaatttgagtataa 26509676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University