View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_26 (Length: 354)
Name: NF11089_high_26
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 36015029 - 36015357
Alignment:
| Q |
11 |
cagagagtatagacgaaccaaggtgacatttagatacattacatgtttttgggattctcccttagcatctgtaactcgtctgatatattcttgtaaattt |
110 |
Q |
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| T |
36015029 |
cagagagtatagacgaaccaaggtgacatttagatacattatatgtttttcggattctcccttagcatctgtaactcgtctgatatattcttgtaaattt |
36015128 |
T |
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| Q |
111 |
gagctttcctttccccgtgcatgttaaacatatttttgcttttagaactgacttctctgttttatatttggcacacatacaattcattccttcatatttg |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36015129 |
gagctttcctttcctcgtgcatgttaaacatatttttgcttttagaactgacttctctgttttatatttggcacacatacaattcattccttcatatttg |
36015228 |
T |
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| Q |
211 |
ccatattaagtacactagaactcaatgcatgcccttatggatatcctattagattatcataataaatattattttcatgataacaccttggtaatgaann |
310 |
Q |
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| T |
36015229 |
ccatattaagtacactagaactcaatgcatgcccttatggatatcctattagattatcataataaatattattttcatgataacaccttggtaatgaatt |
36015328 |
T |
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| Q |
311 |
nnnnnaggagaaccttggtagtaataact |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
36015329 |
tttttaggagaaccttggtagtaataact |
36015357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 36013145 - 36013265
Alignment:
| Q |
93 |
atatattcttgtaaatttgagctttcctttcccc-gtgcatgttaaacatatttttgcttttagaactgacttctctgttttatatttggcacacataca |
191 |
Q |
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|||| ||||||||||||||||||| || |||||| |||||| |||| ||||||||||||||||||| ||| |||||| |||| ||||||||||||||||| |
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| T |
36013145 |
atattttcttgtaaatttgagcttccccttccccagtgcatattaa-catatttttgcttttagaattgatttctctatttt-tatttggcacacataca |
36013242 |
T |
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| Q |
192 |
attcattccttcatatttgccat |
214 |
Q |
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||||| ||| ||||||| |||| |
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| T |
36013243 |
tttcatgcctccatattttccat |
36013265 |
T |
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