View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_high_28 (Length: 350)

Name: NF11089_high_28
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_high_28
NF11089_high_28
[»] chr1 (1 HSPs)
chr1 (173-222)||(27503973-27504022)
[»] chr8 (1 HSPs)
chr8 (170-220)||(41543992-41544042)
[»] chr4 (2 HSPs)
chr4 (144-196)||(10307465-10307517)
chr4 (134-186)||(47576257-47576309)
[»] chr2 (1 HSPs)
chr2 (174-217)||(2567983-2568026)


Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 27503973 - 27504022
Alignment:
Q  173 tttgaatctcaaggctacctttttctcctaaatatacaattaaaaagtat 222  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  27503973 tttgaatctcaaggctacctttttctcctaagtatgcaattaaaaagtat 27504022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 41544042 - 41543992
Alignment:
Q  170 acttttgaatctcaaggctacctttttctcctaaatatacaattaaaaagt 220  Q
    |||| ||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  41544042 acttgtgaatcttaaggctatctttttctcctaagtatacaattaaaaagt 41543992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 10307465 - 10307517
Alignment:
Q  144 gtaagaaaaatattgatctcacatgaacttttgaatctcaaggctaccttttt 196  Q
    |||| |||||||| |||||| || ||||||||||||||||||||||| |||||    
T  10307465 gtaataaaaatatcgatctcgcaagaacttttgaatctcaaggctactttttt 10307517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 47576309 - 47576257
Alignment:
Q  134 ttttatcgttgtaagaaaaatattgatctcacatgaacttttgaatctcaagg 186  Q
    ||||| ||| |||| |||||||||||||||||| |||||| ||||||||||||    
T  47576309 ttttaccgtcgtaaaaaaaatattgatctcacaagaacttatgaatctcaagg 47576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 2568026 - 2567983
Alignment:
Q  174 ttgaatctcaaggctacctttttctcctaaatatacaattaaaa 217  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||    
T  2568026 ttgagtctcaaggctatctttttctcctaaatatgcaattaaaa 2567983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University