View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_29 (Length: 337)
Name: NF11089_high_29
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 154 - 325
Target Start/End: Original strand, 40243463 - 40243634
Alignment:
| Q |
154 |
aaagtggaattggtgttggtggtgacttaattccaaacatcaagtcatcattctctagaggtgtcaaattcaagtccagccccataatcctcttactatt |
253 |
Q |
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| T |
40243463 |
aaagtggaattggtgttggtggtgacttaattccaaacatcaagtcatcattctctagaggtgtcaaattcaagtccagccccataatcctcttactatt |
40243562 |
T |
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| Q |
254 |
caatctcttcaaaactggaaatttttcaataatttgattgatggaagaaaccccttcatttataacagctct |
325 |
Q |
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| T |
40243563 |
caatctcttcaaaactggaaatttttcaataatttgattgatggaagaaaccccttcatttataacagctct |
40243634 |
T |
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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 40243266 - 40243334
Alignment:
| Q |
1 |
gtgttgaaatatcaattttggattctcagaataactgtatgtgtttaccaattacaaaatgaatgaata |
69 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40243266 |
gtgttgaaatatcaattttggattctctgaataactgtatgtgtttaccaattacaaaatgaatgaata |
40243334 |
T |
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