View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_3 (Length: 699)
Name: NF11089_high_3
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 44958789 - 44958306
Alignment:
| Q |
18 |
gaattcccatctcatcaaagaaattctccaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttctttttcaact |
117 |
Q |
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| T |
44958789 |
gaattcccatctcatcaaaaaaattctctaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttctttttcaact |
44958690 |
T |
|
| Q |
118 |
aatactttgaacttattgaagacatgaaacacttcatctttagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgagacaatgt |
217 |
Q |
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| T |
44958689 |
aatactttgaacttattgaagacatgaaacacttcatctctagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgagacaatgt |
44958590 |
T |
|
| Q |
218 |
acctattccctcacaatgaaaatgtatcaaatggtccactaacatcttattaaaccacatcaagctttgccctcactggaatacgagaaacaaatgaggt |
317 |
Q |
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| T |
44958589 |
acctattccctcacaatgaaaatgtatcaaatggtccactaacatcttattaaaccacatcaagctttgccctcattggaatatgagaaacaaatgagtt |
44958490 |
T |
|
| Q |
318 |
ccttgctcgtcaagcaacttaattcgggaaaaccatgcaccatt---gaccttgacttcaaaatactaagaaccttaaagttaggtggctatacccaagg |
414 |
Q |
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| T |
44958489 |
ccttgctcgtcaagcaacttaattcgggaaaaccatgcaccattgacgaccttgacttcaaaatgctaagaaccttaaagttaggtgtctatacccaagg |
44958390 |
T |
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| Q |
415 |
taccacaaccatgttacatcatcaattacctcagttgcaaaatagtgaaatttagttgcattgatttggacttgaaatattcta |
498 |
Q |
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| T |
44958389 |
taccacaaccatgttacatcatcaattacctcagttgcaaaatagtgaaatttagttgcattgatttggacttgaaatattcta |
44958306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 491 - 689
Target Start/End: Complemental strand, 44958112 - 44957918
Alignment:
| Q |
491 |
atattctattatgagatataggagctcttaattagaattctcttatattaattcaacttcaaaaacttatatttggttgtgttcaatgtgcatagtaaaa |
590 |
Q |
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| T |
44958112 |
atattctattatgagatataggagctctta----gaattctcttatattaattcaacttcaaaaacttatatttggttgtgttcaatgtgcatagtaaaa |
44958017 |
T |
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| Q |
591 |
cctttttctagtaattagcccatgcttattaaattactcttgatcctaggaacatagatcacccatgtaatgatttccttgtgtccatgcttgcctttg |
689 |
Q |
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| T |
44958016 |
cctttttgtagtaattagcccatgcttattaaattactcttgatcctaggaacatagatcacccatgtaatgatttccttgtgtccatgcttgcctttg |
44957918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 606
Target Start/End: Original strand, 32561428 - 32561485
Alignment:
| Q |
549 |
tcaaaaacttatatttggttgtgttcaatgtgcatagtaaaacctttttctagtaatt |
606 |
Q |
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| T |
32561428 |
tcaaaaactttaatttgattgtgttcaagatgcatagtaaaaccattttctagtaatt |
32561485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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