View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_31 (Length: 334)
Name: NF11089_high_31
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 5859389 - 5859673
Alignment:
| Q |
1 |
tgttttatgttccaaagatatcaattcattcagtgaggtatatgtttattttatttttgtcaaatttcgcgagtagaattactagttacaaaaatgaaca |
100 |
Q |
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| T |
5859389 |
tgttttatgttccaaagatatcaattcattcagtgaggtatatgtttattttatttttgtcaaatttcgcgagtagaattactagttacaaaaatgaaca |
5859488 |
T |
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| Q |
101 |
tcattcttctatttttcacagctcacatcaggacttaatacagcacatattttagacccactatgtgagtggcgtgacgataatgaaaaatctccgagga |
200 |
Q |
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| T |
5859489 |
tcattcttctatttttcacagctcacatcaggacttaatacagcacatattttagacccactatgtgagtggcgtgacgataatgaaaaatctccgagga |
5859588 |
T |
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| Q |
201 |
gatctctaattaagaattatttctccaagttcctcaatataaatctcaaattgccacccttaagttgtcgagtaatgcttcttac |
285 |
Q |
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| T |
5859589 |
gatctctaattaagaattatttctccaagttcctccatataaatctcaaattgccacccttaagttgtcgagtaatgcttcttac |
5859673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 283
Target Start/End: Original strand, 5866031 - 5866266
Alignment:
| Q |
50 |
tttatttttgtcaaatttcgcgagtagaattactagttacaaaaatgaacatcattc--ttctatttttcacagctcacatcaggacttaatacagcaca |
147 |
Q |
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|||||||||||||||||||||||||||| || ||||| |||||| ||||| ||||| |||| |||| ||||| ||||||||||| || || | |||| |
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| T |
5866031 |
tttatttttgtcaaatttcgcgagtagagtttctagtcacaaaaccgaacaacattcttttcttttttccacaggtcacatcaggaattcatgaaccaca |
5866130 |
T |
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| Q |
148 |
tattttagacccactatgtgagtggcgtgacgataatgaaaaatctccgaggagatctctaattaagaattatttctccaagttcctcaatataaatctc |
247 |
Q |
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| T |
5866131 |
tattttagagccgagttgtgagtggcttgataatactgaaaattctccaaggagatctctcatcaataaagatcccaccaatttcctcaacacaaatctc |
5866230 |
T |
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| Q |
248 |
aaattgccacccttaagttgtcgagtaatgcttctt |
283 |
Q |
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|||||||||| ||||| || ||||||||||||||| |
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| T |
5866231 |
aaattgccacttttaagctgccgagtaatgcttctt |
5866266 |
T |
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