View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_high_37 (Length: 285)

Name: NF11089_high_37
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_high_37
NF11089_high_37
[»] chr1 (3 HSPs)
chr1 (1-270)||(38953447-38953716)
chr1 (12-201)||(30198155-30198344)
chr1 (49-202)||(47243967-47244120)
[»] chr3 (3 HSPs)
chr3 (11-199)||(25452584-25452772)
chr3 (12-202)||(48766360-48766551)
chr3 (15-145)||(17229662-17229792)
[»] chr4 (1 HSPs)
chr4 (12-187)||(48425664-48425837)
[»] chr5 (1 HSPs)
chr5 (14-143)||(13136638-13136768)
[»] chr6 (2 HSPs)
chr6 (47-202)||(11106714-11106869)
chr6 (47-148)||(3535505-3535607)
[»] chr2 (1 HSPs)
chr2 (38-201)||(40799786-40799949)
[»] chr7 (3 HSPs)
chr7 (12-153)||(22042096-22042239)
chr7 (12-145)||(27446540-27446675)
chr7 (23-123)||(14670524-14670625)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38953716 - 38953447
Alignment:
Q  1 ccttaaaaccgggattaggatttgctgctgtaaatttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagattta 100  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38953716 ccttaaaactgggattaggatttgctgctgtaaatttacacgcagttgcacgctgtagcacatctcagccgtaaatatgagatccgtcggtccagattta 38953617  T
Q  101 atcacagtttcacacagtaaaataatctcagccatcaatttaaaattgaattgtctggatcatttacatcaccctgctgtaacagcaaggaatctgattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  38953616 atcacagtttcacacagtaaaataatctcagccatcaatttaaaattgaatggcctggatcatttacatcaccctgctgtaacagcaaggaatctgattc 38953517  T
Q  201 ccttaaaaccgtcacaagctcgaattgtatcacatatgagctagtaacgaaatatgtgataaatggtctc 270  Q
    |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  38953516 ccttaaaaccatcacaagctcggattgtatcacacatgagctagtaacgaaatatgtgataaatggtctc 38953447  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 30198344 - 30198155
Alignment:
Q  12 ggattaggatttgctgctgtaaatttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttc 111  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||    || || ||| |||| | ||| |||||||||||||||||||    
T  30198344 ggattaggatttgctggtgtaaatttacacgcagttgcacgctgtagcacatctcaattatagatttgatatccattggttcagatttaatcacagtttc 30198245  T
Q  112 acacagtaaaataatctcagccatcaatttaaaattgaattgtctggatcatttacatcaccctgctgtaacagcaaggaatctgattcc 201  Q
    ||||||||||||||||||||||||||||||||||||||||   || ||||| ||||| |||||||||||||||||| |||||||||||||    
T  30198244 acacagtaaaataatctcagccatcaatttaaaattgaatgacctagatcagttacagcaccctgctgtaacagcagggaatctgattcc 30198155  T

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Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 47244120 - 47243967
Alignment:
Q  49 cacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttcacacagtaaaataatctcagccatcaatttaaaattg 148  Q
    ||||| |||||| ||||||  ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47244120 cacgcagtagcacatctcaaacgtaaatatgagatcagtcggtccatatttaatcacggtttcacacagtaaaataatctcagccatcaatttaaaattg 47244021  T
Q  149 aattgtctggatcatttacatcaccctgctgtaacagcaaggaatctgattccc 202  Q
    ||| | || ||||| ||||| ||||||||||||||| | |||||||||||||||    
T  47244020 aatggcctagatcagttacaacaccctgctgtaacaacgaggaatctgattccc 47243967  T

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Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 25452772 - 25452584
Alignment:
Q  11 gggattaggatttgctgctgtaaatttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagttt 110  Q
    ||||||||||||||||| |||||||||| || ||| ||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  25452772 gggattaggatttgctgttgtaaatttaaacgcagttgcacactgtagcatatctcaacagtagatatgagatccgtcggtccagatttaatcacagttt 25452673  T
Q  111 cacacagtaaaataatctcagccatcaatttaaaattgaattgtctggatcatttacatcaccctgctgtaacagcaaggaatctgatt 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||||||    
T  25452672 cacacagtaaaataatctcagccatcaatttaaaattgaatggtctggatcagttacagcaccctgctgtaacagcagggaatctgatt 25452584  T

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Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 48766360 - 48766551
Alignment:
Q  12 ggattaggatttgctgctgtaaat-ttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagttt 110  Q
    ||||||||||||| |||||||||| |||||| ||| |||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||| |||    
T  48766360 ggattaggatttgttgctgtaaatattacacgcagttgcacgctgtagcacatctcaaccgtagatatgagatccgtcggttcagatttaatcacaattt 48766459  T
Q  111 cacacagtaaaataatctcagccatcaatttaaaattgaattgtctggatcatttacatcaccctgctgtaacagcaaggaatctgattccc 202  Q
    ||||  ||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  48766460 cacattgtaaaataatctcagccatcaatttaaaattgaatggcctggatcagttacagcaccctgctgtaacagcagggaatctgattccc 48766551  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 17229792 - 17229662
Alignment:
Q  15 ttaggatttgctgctgtaaatttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttcaca 114  Q
    ||||||||||||| |||| |||||||| ||| |||||||||||| | || ||| ||||| ||||||||||| |||||||||||||||||||||| | |||    
T  17229792 ttaggatttgctgttgtatatttacacgcagttgcacgctgtagtacatttcaaccgtagatatgagatccatcggtccagatttaatcacagtcttaca 17229693  T
Q  115 cagtaaaataatctcagccatcaatttaaaa 145  Q
    |||||||||||| ||| ||||||||||||||    
T  17229692 cagtaaaataatttcaaccatcaatttaaaa 17229662  T

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Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 48425837 - 48425664
Alignment:
Q  12 ggattaggatttgctgctgtaaatttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttc 111  Q
    |||||||||||||||| ||||||||||||  ||| |||||||||||||| |||  | ||||| ||||||||||||||||| ||||| |||||||||||||    
T  48425837 ggattaggatttgctgttgtaaatttacatgcagttgcacgctgtagcacatc--aaccgtagatatgagatccgtcggttcagatctaatcacagtttc 48425740  T
Q  112 acacagtaaaataatctcagccatcaatttaaaattgaattgtctggatcatttacatcaccctgctgtaacagca 187  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||| ||||||||||||||||||    
T  48425739 acacagtaaaataatctcagccatcaatttaaaatagaatggtttggatcaattacagcaccctgctgtaacagca 48425664  T

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Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 13136768 - 13136638
Alignment:
Q  14 attaggatttgctgctgtaaat-ttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttca 112  Q
    |||||||||||||||||||||| |||||| ||| | ||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |    
T  13136768 attaggatttgctgctgtaaatattacacgcagttacacgcggtagcacatctcaaccgtagatatgagatccgtcggtccagatttaatcacagtttta 13136669  T
Q  113 cacagtaaaataatctcagccatcaatttaa 143  Q
    |||||||| ||||||||||||||||||||||    
T  13136668 cacagtaatataatctcagccatcaatttaa 13136638  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 11106869 - 11106714
Alignment:
Q  47 tgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttcacacagtaaaataatctcagccatcaatttaaaat 146  Q
    |||||| ||||||| |||||| ||||| |||||| || ||||| |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  11106869 tgcacgatgtagcacatctcaaccgtagatatgacattcgtcgatccagatttaatcacaatttcacacaataaaataatctcaaccatcaatttaaaat 11106770  T
Q  147 tgaattgtctggatcatttacatcaccctgctgtaacagcaaggaatctgattccc 202  Q
    | ||| | ||| |||||||||| |||||| ||||| || || ||||||||||||||    
T  11106769 taaatggcctgaatcatttacaacaccctactgtatcaacagggaatctgattccc 11106714  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 3535607 - 3535505
Alignment:
Q  47 tgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagattt-aatcacagtttcacacagtaaaataatctcagccatcaatttaaaa 145  Q
    |||||| |||||||||||||| || |  |||||||||| |||||||||| ||| ||||||||||||| ||||| |||| ||||| || ||||||||||||    
T  3535607 tgcacgatgtagcatatctcaaccatggatatgagatcggtcggtccagtttttaatcacagtttcatacagtgaaatgatctcggcaatcaatttaaaa 3535508  T
Q  146 ttg 148  Q
    |||    
T  3535507 ttg 3535505  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 40799949 - 40799786
Alignment:
Q  38 acactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttcacacagtaaaataatctcagccatca 137  Q
    |||| ||| |||||||| || || |||||| ||||| ||||||  || ||||||||||||||||||| ||||||||| |||||||| |||||| ||||||    
T  40799949 acacgcagttgcacgctataacacatctcaaccgtagatatgaattcagtcggtccagatttaatcaaagtttcacaaagtaaaatgatctcatccatca 40799850  T
Q  138 atttaaaattgaattgtctggatcatttacatcaccctgctgtaacagcaaggaatctgattcc 201  Q
    |||||||||||||| | |||||| | ||||| ||||||| ||||||| || |||||||||||||    
T  40799849 atttaaaattgaatggcctggattagttacagcaccctgatgtaacaacagggaatctgattcc 40799786  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 22042096 - 22042239
Alignment:
Q  12 ggattaggatttgctgctgtaaat-ttacactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccagattt-aatcacagtt 109  Q
    |||||| ||||| ||||||||||| ||||||  || |||||||||||||||||||||  |||| ||||||||||  ||||| ||||||| ||||||||||    
T  22042096 ggattatgattttctgctgtaaatattacacgtagttgcacgctgtagcatatctcaatcgtagatatgagatcgatcggttcagattttaatcacagtt 22042195  T
Q  110 tcacacagtaaaataatctcagccatcaatttaaaattgaattg 153  Q
    | |||||||||||| || |||| |||||||||||||||||||||    
T  22042196 ttacacagtaaaatgatttcagtcatcaatttaaaattgaattg 22042239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 27446540 - 27446675
Alignment:
Q  12 ggattaggatttgctgctgtaaattt-acactcagctgcacgctgtagcatatctcagccgtaaatatgagatccgtcggtccaga-tttaatcacagtt 109  Q
    ||||||||||||  |||||||||| | |||| ||| |||||||||||| | ||||||||||||||||| | ||  ||||||| ||| |||||||| ||||    
T  27446540 ggattaggatttcatgctgtaaatatcacacgcagttgcacgctgtagtacatctcagccgtaaatataaaattggtcggtctagattttaatcatagtt 27446639  T
Q  110 tcacacagtaaaataatctcagccatcaatttaaaa 145  Q
    || || | |||||| || |||||||| |||||||||    
T  27446640 tcgcataataaaatgatttcagccattaatttaaaa 27446675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 14670625 - 14670524
Alignment:
Q  23 tgctgctgtaaat-ttacactcagctgcacgctgt-agcatatctcagccgtaaatatgagatccgtcggtccagatttaatcacagtttcacacagtaa 120  Q
    ||||||| ||||| |||||| ||| |||||||| | |||| |||||| | ||| |||||||||| ||||||| ||| |||||||||||||||||||||||    
T  14670625 tgctgctataaatgttacacgcagttgcacgctctgagcacatctcaactgtagatatgagatctgtcggtc-agacttaatcacagtttcacacagtaa 14670527  T
Q  121 aat 123  Q
    |||    
T  14670526 aat 14670524  T

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