View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_40 (Length: 276)
Name: NF11089_high_40
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 10294310 - 10294059
Alignment:
| Q |
8 |
caatttcaggacaacaccatcccccatttctacaattgctactagatatccgcctttaacccacaacaattatttacaaggtagacctttatagagacag |
107 |
Q |
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| T |
10294310 |
caatttcaggacaacaccatcccccatttctacaattgctactagatatccgcctttaacccacaacaattctttacaaggtagacctttatagagacag |
10294211 |
T |
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| Q |
108 |
tcagattgtttgactttaggggcatcagaatcaaaacaaacttcaatcataaaaaattccccagtatctacacaaaagatcatcctaggaacttcattat |
207 |
Q |
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| T |
10294210 |
tcagattgtttgactttaggggcatcagaatcaaaacaaacttcaatcataaaaaattccccagtatctacacaaaagatcatcctaggaacttcattat |
10294111 |
T |
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| Q |
208 |
tgccatgttcccaactccaggagcatatatacttgcgacccaaattagtatc |
259 |
Q |
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| T |
10294110 |
tgccatgttcccaactccaagagcatatatacttgcgacccaaattagtatc |
10294059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 43798980 - 43799213
Alignment:
| Q |
8 |
caatttcaggacaacaccatcccccatttctacaattgctactagatatccgcctttaacccacaacaattatttacaaggtagacctttatagagacag |
107 |
Q |
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|||||||||||| || | ||||||||||||||||||| | |||||||||| | ||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
43798980 |
caatttcaggaccacgctgtcccccatttctacaattgatgctagatatccctccttaacccacaaaagttctttacaaggtagacctttatagagacac |
43799079 |
T |
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| Q |
108 |
tcagattgtttgactttaggggcatcagaatcaaaacaaacttcaatcataaaaaattccccagtatctacacaaaagatcatcctaggaacttcattat |
207 |
Q |
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| T |
43799080 |
tccgagagactcaatttagggccatcggagtcaaaataaacttcaatcataaaaaattctccagtgtctacacaaaagatcatcctaggaacttcataat |
43799179 |
T |
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| Q |
208 |
tgccatgttcccaactccaggagcatatatactt |
241 |
Q |
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| T |
43799180 |
tttcaggttcccaactccaagagcatatgtactt |
43799213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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