View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_41 (Length: 276)
Name: NF11089_high_41
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_41 |
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| [»] chr4 (6 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 11676239 - 11675979
Alignment:
| Q |
16 |
acatcaaagcaacaaaccaatagagctatctgtctatctaatactaatatgtacagaagaagaaaaattcaagtctttagacgtcatattaagtaacaaa |
115 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11676239 |
acatcaaaacaataaaccaatagagctatctgtctatctaatactagtatgtacagaagaagaaaaattcaagtctttggacgtcatattaagtaacaac |
11676140 |
T |
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| Q |
116 |
aatactgaccatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaa |
215 |
Q |
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| T |
11676139 |
aatactgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaa |
11676040 |
T |
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| Q |
216 |
gcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
276 |
Q |
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| T |
11676039 |
gcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
11675979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 11684518 - 11684258
Alignment:
| Q |
16 |
acatcaaagcaacaaaccaatagagctatctgtctatctaatactaatatgtacagaagaagaaaaattcaagtctttagacgtcatattaagtaacaaa |
115 |
Q |
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| T |
11684518 |
acatcaaaacaataaaccaatagagctatctgtctatctaatactagtatgtacagaagaagaaaaattcaagtctttggacgtcatattaagtaacaac |
11684419 |
T |
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| Q |
116 |
aatactgaccatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaa |
215 |
Q |
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| T |
11684418 |
aatactgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaa |
11684319 |
T |
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| Q |
216 |
gcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
276 |
Q |
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| T |
11684318 |
gcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
11684258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 274
Target Start/End: Complemental strand, 11779190 - 11779056
Alignment:
| Q |
140 |
agaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcaca |
239 |
Q |
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| T |
11779190 |
agaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagaggaaggagagaagcagttccagcccaaacattcaca |
11779091 |
T |
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| Q |
240 |
ttctcagcagcagttgcagtgctttgtttgagtgg |
274 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
11779090 |
ttcttagcagcagttgcagtgctttgtttgagtgg |
11779056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 129 - 276
Target Start/End: Complemental strand, 11696222 - 11696075
Alignment:
| Q |
129 |
atataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagccc |
228 |
Q |
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||||| |||| |||||| || ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
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| T |
11696222 |
atatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
11696123 |
T |
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| Q |
229 |
aaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
276 |
Q |
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| T |
11696122 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
11696075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 11702029 - 11701874
Alignment:
| Q |
119 |
actgaccatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
218 |
Q |
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| T |
11702029 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
11701930 |
T |
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| Q |
219 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtgg |
274 |
Q |
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| T |
11701929 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtgg |
11701874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 11798069 - 11797916
Alignment:
| Q |
123 |
accatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
222 |
Q |
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||||| ||||| |||| |||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
11798069 |
accataatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
11797970 |
T |
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| Q |
223 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
276 |
Q |
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| T |
11797969 |
caacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
11797916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 16653 - 16517
Alignment:
| Q |
140 |
agaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcaca |
239 |
Q |
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| T |
16653 |
agaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagaggaagtagagaagcagttccagcccaaatattcaca |
16554 |
T |
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| Q |
240 |
ttctcagcagcagttgcagtgctttgtttgagtggtc |
276 |
Q |
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|||| |||||| ||||||||||||||||||||||||| |
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| T |
16553 |
ttcttagcagctgttgcagtgctttgtttgagtggtc |
16517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 6645 - 6737
Alignment:
| Q |
168 |
ccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtg |
260 |
Q |
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||||||||||||||||||| ||||||||||| ||||| || | ||||| ||||| ||| || || |||||||| || |||||||||||| |
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| T |
6645 |
ccaagaaaagaatcagcaagaaaagcaccaagcagagggagcaaggaagctgttccagaccagatgttaacattctcggctgcagttgcagtg |
6737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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