View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_43 (Length: 263)
Name: NF11089_high_43
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 54793286 - 54793510
Alignment:
| Q |
15 |
aattctatataaaaagaaatgttactcatacttgttgcatccttttaacctttatcttcttgtattcttaactataaccaactaacaagttgcatagatt |
114 |
Q |
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| T |
54793286 |
aattctatataaaaagaaatgttactcatacttgttgcatccttttaacctttatcttcttgtattcttaactataaccaactaacaagttgcatagatt |
54793385 |
T |
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| Q |
115 |
tcttcatgctaagttataaagtacccgcgtgaagatcatctctacctttctttaggaaataagaattttgatattttgttgttctgctgtgaatatattg |
214 |
Q |
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| T |
54793386 |
tcttcatgctaagttataaagtacccgcgtgaagatcatctctacctttctttaggaaataagaattttgatattttgttgttctgctgtgaatatattg |
54793485 |
T |
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| Q |
215 |
tggagactaaagttgttccccctca |
239 |
Q |
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||||||||||||||||||||||||| |
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| T |
54793486 |
tggagactaaagttgttccccctca |
54793510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 52285956 - 52286179
Alignment:
| Q |
15 |
aattctatataaaaagaaatgttactcatacttgttgcatccttttaacctttatcttcttgtattcttaactataaccaactaacaa----gttgcata |
110 |
Q |
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|||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||||| |
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| T |
52285956 |
aattctatatcaaaagaaatgttactcata-ttcttgcatccttttaacctttatcttattgtattcttaacgataaccaactaacaaacaaggtgcata |
52286054 |
T |
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| Q |
111 |
gatttcttcatgctaagttataaagtacccgcgtgaagatcatctctacctttctttaggaaataagaattttgatattttgttgttctgctgtgaatat |
210 |
Q |
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| T |
52286055 |
tatttcttcacgctaacttataaagtacct-cgtgaagattgtctccacctttctttaggaaataagaattttgatattctgttgttctgctgtgagtat |
52286153 |
T |
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| Q |
211 |
attgtggagactaaagttgttccccc |
236 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
52286154 |
attgtggagactaatgttgttccccc |
52286179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 801152 - 801369
Alignment:
| Q |
20 |
tatataaaaagaaatgttactcatacttgttgcatccttttaacctttatcttcttgtattcttaactataaccaactaacaagttgcatagatttcttc |
119 |
Q |
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|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
801152 |
tatataaaaagaaatgtt--tcacacttgttgcatcctttgaacctttatcttcttgtattcttaaagataaccaactaacaaggtgcatagatttcttc |
801249 |
T |
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| Q |
120 |
atgctaagttat-aaagtacccgcgtgaagatcatctctacctttctttaggaaataagaattttgatattttgttgttctgctgtgaatatattgtgga |
218 |
Q |
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|||||| | | | |||||||| || ||||||| ||||| |||| |||||||||||||||| |||| |||||| |||||||||||| ||||||||||||| |
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| T |
801250 |
atgctatgctgtaaaagtaccggcatgaagattatctccacctctctttaggaaataagattttttatatttcattgttctgctgtaaatatattgtgga |
801349 |
T |
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| Q |
219 |
gactaaagttgttccccctc |
238 |
Q |
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||||||||||| | |||||| |
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| T |
801350 |
gactaaagttgatacccctc |
801369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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