View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11089_high_44 (Length: 263)
Name: NF11089_high_44
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 45099513 - 45099746
Alignment:
| Q |
12 |
gagatgaatggttcttttgttgcttttattttctttaaatttggtggaattgaagacaaaattttggtgctcatatggtacttggtagcccttctttctc |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45099513 |
gagatgaatggttcttctgttgcttttattttatttaaatttggtggaattgaagacaaaattttggtgctcatatggtacttggtagcccttctttctc |
45099612 |
T |
|
| Q |
112 |
tcaaaaaatgtccagctataactgatttatggtagtttccttatctacaaatttgacgttggtccaatgcaatagtataatcaaaaacccgtttgaactt |
211 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45099613 |
tccaaaaatgtccatctataactcatttatggtagtttccttatctacaaatttgacgttggtccaatgcaatagtataatcaaaaacccgtttgaactt |
45099712 |
T |
|
| Q |
212 |
aatattcaaaacaactgaataaaatagtaattgc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45099713 |
aatattcaaaacaactgaataaaatagtaattgc |
45099746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 12228005 - 12228122
Alignment:
| Q |
128 |
tataactgatttatggtagtttccttatctacaaatttgacgttggtccaatgcaatagtataatcaaaaacccgtttgaacttaatattcaaaacaact |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
12228005 |
tataactgatttatggtagtttccttatctacaaatttgacgccggtccaatgcaatagtataattaaaaacccgtttgaacataatattcaaaacaact |
12228104 |
T |
|
| Q |
228 |
gaataaaatagtaattgc |
245 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12228105 |
gaataaaatagtaattgc |
12228122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 35168168 - 35168102
Alignment:
| Q |
101 |
ccttctttctct-caaaaaatgtccagctataactgatttatggtagtttccttatctacaaatttg |
166 |
Q |
| |
|
|||||||||||| | ||||||| || | ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35168168 |
ccttctttctcttccaaaaatgccctgttataattgatttatggtagtttccttatctacaaatttg |
35168102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University