View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11089_high_47 (Length: 254)

Name: NF11089_high_47
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11089_high_47
NF11089_high_47
[»] chr8 (2 HSPs)
chr8 (1-240)||(20526341-20526580)
chr8 (8-217)||(10600833-10601042)
[»] chr3 (1 HSPs)
chr3 (4-233)||(12370961-12371190)
[»] chr5 (4 HSPs)
chr5 (29-240)||(26683233-26683448)
chr5 (11-240)||(29755122-29755351)
chr5 (62-217)||(5335401-5335556)
chr5 (22-105)||(27393282-27393365)
[»] chr2 (4 HSPs)
chr2 (4-233)||(10973724-10973953)
chr2 (8-217)||(2973611-2973816)
chr2 (11-213)||(14230765-14230967)
chr2 (67-233)||(17826545-17826711)
[»] chr4 (4 HSPs)
chr4 (11-213)||(12354966-12355168)
chr4 (62-212)||(27066931-27067081)
chr4 (62-212)||(27087644-27087794)
chr4 (86-233)||(54027878-54028025)
[»] chr6 (1 HSPs)
chr6 (11-213)||(30141134-30141336)
[»] scaffold1964 (1 HSPs)
scaffold1964 (8-233)||(852-1076)
[»] chr1 (4 HSPs)
chr1 (8-217)||(47747303-47747512)
chr1 (41-217)||(47726030-47726206)
chr1 (8-163)||(6949681-6949836)
chr1 (23-211)||(2002735-2002923)
[»] scaffold0643 (1 HSPs)
scaffold0643 (90-202)||(868-980)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20526580 - 20526341
Alignment:
Q  1 caacatcggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20526580 caacatcggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattg 20526481  T
Q  101 ggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20526480 ggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtctactctaaaatcacaaaagatgctatttactcgggtc 20526381  T
Q  201 gggaagacataactgaagtcggtaacattatcattgcttc 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20526380 gggaagacataactgaagtcggtaacattatcattgcttc 20526341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 10600833 - 10601042
Alignment:
Q  8 ggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttc 107  Q
    ||||||||||| | ||| |||| ||||||||||||||||||||||||| |||  |||| |||||| ||||||||||| || || ||||| || || |||     
T  10600833 ggcatttgcattcgtgacgaagatggagtctttgttttggctagaacagtcacctttattggtgtatatccggttgacataggtgaagctttaggccttt 10600932  T
Q  108 accttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaaga 207  Q
    ||| ||| || ||||||| || |||||||||| | |||||||| ||||||||||| ||||| |||| |||||||||  || ||| ||| |||||||||||    
T  10600933 accatgcgcttcaatgggcgagtgatatgcacttagataatattgattttgaagttgactccaaaaccacaaaagacactctttgctcaggtcgggaaga 10601032  T
Q  208 cataactgaa 217  Q
    ||||||||||    
T  10601033 cataactgaa 10601042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 12371190 - 12370961
Alignment:
Q  4 catcggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggt 103  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||| ||||| || | |||||||||||||    
T  12371190 catcggcatttgcatccgtgatgaaggtggggtctttgttttggctagaacaatcagttttaatggtgtatatcctgttgacatagaggaagcattgggt 12371091  T
Q  104 cttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcggg 203  Q
    ||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||    
T  12371090 ctttaccatgctctccaataggtgagtgatatgcaccttgataatatggattttgaagttgactctaaaattacaaaaaatgctctttactcgggtcggg 12370991  T
Q  204 aagacataactgaagtcggtaacattatca 233  Q
    ||||||||||||||||||||||||||||||    
T  12370990 aagacataactgaagtcggtaacattatca 12370961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 26683233 - 26683448
Alignment:
Q  29 ggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaatgggtga 128  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||| || ||||||||||  |||||| ||| |||||||||||||||||    
T  26683233 ggtggagtctttgttttggctagaacaatcagttttaatggtgtatatcctgttgacataggggaagcatctggtctttaccatgctctccaatgggtga 26683332  T
Q  129 atgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaagac----ataactgaagtcggta 224  Q
     |||||||||||||||||||||| ||||||||||  ||||| |||| |||||||||||| |||||||||||| |||||||    ||||||||||||||||    
T  26683333 gtgatatgcaccttgataatatgaattttgaagtttactcttaaattacaaaagatgctctttactcgggtctggaagacatatataactgaagtcggta 26683432  T
Q  225 acattatcattgcttc 240  Q
    ||||||||||||||||    
T  26683433 acattatcattgcttc 26683448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 29755351 - 29755122
Alignment:
Q  11 atttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcacc 110  Q
    |||||||||| ||| ||||| ||||| ||||| |||||||||||| | |  |||| |||||| ||||||||||| ||||||||||| ||||  ||| |||    
T  29755351 atttgcatccgtgacgaagggggagtttttgtgttggctagaacaattagctttattggtgtctatccggttgacattggggaagctttggacctttacc 29755252  T
Q  111 ttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacat 210  Q
     ||| || ||||||||||  ||||||||| ||||||| || |||||||||||||||||||||| ||||||| | | | |||| |||||| ||||||||||    
T  29755251 atgcgcttcaatgggtgagcgatatgcactttgataacattgattttgaagtcgactctaaaaccacaaaaaacggtctttattcgggttgggaagacat 29755152  T
Q  211 aactgaagtcggtaacattatcattgcttc 240  Q
    ||| ||| | || ||||| ||||| |||||    
T  29755151 aacggaatttggaaacatcatcatagcttc 29755122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 5335556 - 5335401
Alignment:
Q  62 tttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaag 161  Q
    |||| |||||| ||||||||||| ||||||||||| ||||  ||| ||| ||| || ||||||| ||  |||||||| |||||||| ||  |||||||||    
T  5335556 tttattggtgtctatccggttgacattggggaagctttggacctttaccatgcgcttcaatgggcgagcgatatgcatcttgataacattaattttgaag 5335457  T
Q  162 tcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacataactgaa 217  Q
    |||||||||||| ||||||||| | | |||| ||||||||||||||||||||||||    
T  5335456 tcgactctaaaaccacaaaagacggtctttattcgggtcgggaagacataactgaa 5335401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 27393365 - 27393282
Alignment:
Q  22 tgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtct 105  Q
    |||||||||||| || ||||||||||| | |||| |||  |||  |||||| || |||||||||||||| ||||| ||||||||    
T  27393365 tgatgaaggtggtgtgtttgttttggccaaaacaatcagctttgttggtgtttacccggttgatattggcgaagccttgggtct 27393282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 10973953 - 10973724
Alignment:
Q  4 catcggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggt 103  Q
    ||||| ||||||||||| ||| |||||||| |||||||||||||| |||||| | | ||||| |||||| |||||| |||| |||| |||||| ||||||    
T  10973953 catcgacatttgcatccgtgaagaaggtggggtctttgttttggccagaacaataagttttattggtgtttatccgattgacattgaggaagctttgggt 10973854  T
Q  104 cttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcggg 203  Q
    ||| ||| ||| || |||||||  | ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| | || ||||||| ||    
T  10973853 ctttaccatgcgcttcaatgggctagtgatatgcaccttgataatattgattttgaagtcgactctaaaaccataaaagatgctctatattcgggtcagg 10973754  T
Q  204 aagacataactgaagtcggtaacattatca 233  Q
    |||||||||| ||| | |||||||| ||||    
T  10973753 aagacataacagaatttggtaacatcatca 10973724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 2973816 - 2973611
Alignment:
Q  8 ggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttc 107  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||| |||  |||   ||||| ||||||||||| || || ||||| || ||  ||     
T  2973816 ggcatttgcatccgtgacgaagatggagtctttgttttggctagaacagtcaccttt---ggtgtatatccggttgacataggtgaagctttaggcattt 2973720  T
Q  108 accttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaaga 207  Q
    ||| ||| || ||||||  || ||||||| || | |||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  2973719 accatgcgcttcaatggc-gagtgatatggacttagataatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaaga 2973621  T
Q  208 cataactgaa 217  Q
    ||||||||||    
T  2973620 cataactgaa 2973611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 14230765 - 14230967
Alignment:
Q  11 atttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcacc 110  Q
    |||||||||| ||| ||||| ||||| ||||| |||||||||||| | |  |||| |||||| ||||||||||| ||||||||||| ||||| ||| |||    
T  14230765 atttgcatccgtgacgaagggggagtttttgtgttggctagaacaattagctttattggtgtctatccggttgacattggggaagctttgggcctttacc 14230864  T
Q  111 ttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacat 210  Q
     ||| || ||||||  ||  ||||||||||||| ||  || ||| |||||||||||||||||| ||||||||||| | |||| |||||||||||||||||    
T  14230865 atgcgcttcaatggacgagcgatatgcaccttgttatcattgatattgaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacat 14230964  T
Q  211 aac 213  Q
    |||    
T  14230965 aac 14230967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 17826545 - 17826711
Alignment:
Q  67 tggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgac 166  Q
    |||||| ||||||||||| ||||||||||| ||| | ||| ||| ||| || ||||||   |  |||||||||||||||||||| |||||||||||||||    
T  17826545 tggtgtctatccggttgacattggggaagctttgagcctttaccatgcgcttcaatggacaagcgatatgcaccttgataatattgattttgaagtcgac 17826644  T
Q  167 tctaaaatcacaaaagatgctatttactcgggtcgggaagacataactgaagtcggtaacattatca 233  Q
    ||||||||||||||||||||| |||| ||| |||||||||| ||||| ||| | |||||||| ||||    
T  17826645 tctaaaatcacaaaagatgctctttattcgtgtcgggaagatataaccgaatttggtaacatcatca 17826711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 12354966 - 12355168
Alignment:
Q  11 atttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcacc 110  Q
    |||||||||| ||| ||||| ||||| ||||| |||||||||||| | |  |||| |||||| ||||||||||| ||||||||||| ||||| ||| |||    
T  12354966 atttgcatccgtgacgaagggggagtttttgtgttggctagaacaattagctttattggtgtctatccggttgacattggggaagctttgggcctttacc 12355065  T
Q  111 ttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacat 210  Q
     |||  | ||||||| ||  ||||||||||||||||| || |||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||    
T  12355066 atgcgattcaatgggcgagcgatatgcaccttgataacattgattttgaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacat 12355165  T
Q  211 aac 213  Q
    |||    
T  12355166 aac 12355168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 27067081 - 27066931
Alignment:
Q  62 tttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaag 161  Q
    |||| |||||| ||||| ||||| ||||||||||| ||| | ||| ||| ||| || ||||||| ||   |||||||||||||||| || ||||||||||    
T  27067081 tttattggtgtctatccagttgacattggggaagctttgagcctttaccatgcgcttcaatgggcgagcaatatgcaccttgataacattgattttgaag 27066982  T
Q  162 tcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacataa 212  Q
    |||||||||||| |||| |||| | |||||| |||||||||||||||||||    
T  27066981 tcgactctaaaaccacagaagacggtatttattcgggtcgggaagacataa 27066931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 27087794 - 27087644
Alignment:
Q  62 tttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaag 161  Q
    |||| |||||| ||||| ||||| ||||||||||| ||| | ||| ||| ||| || ||||||| ||   |||||||||||||||| || ||||||||||    
T  27087794 tttattggtgtctatccagttgacattggggaagctttgagcctttaccatgcgcttcaatgggcgagcaatatgcaccttgataacattgattttgaag 27087695  T
Q  162 tcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacataa 212  Q
    |||||||||||| |||| |||| | |||||| |||||||||||||||||||    
T  27087694 tcgactctaaaaccacagaagacggtatttattcgggtcgggaagacataa 27087644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 54028025 - 54027878
Alignment:
Q  86 attggggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatg 185  Q
    |||||||||||  | || ||| ||| ||| || ||||||| ||  |||||||||||||||||||| |||| ||| || |||||||||| ||||||||| |    
T  54028025 attggggaagctctaggcctttaccatgcgcttcaatgggcgagcgatatgcaccttgataatattgattgtgaggttgactctaaaaccacaaaagacg 54027926  T
Q  186 ctatttactcgggtcgggaagacataactgaagtcggtaacattatca 233  Q
    || |||  ||| |||||||||| ||||| ||| | |||||||| ||||    
T  54027925 ctctttgttcgagtcgggaagatataaccgaatttggtaacatcatca 54027878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 30141336 - 30141134
Alignment:
Q  11 atttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcacc 110  Q
    |||||||||| ||| |||||  |||| || || |||||||||||| | | ||||| |||||| ||||||||||| ||||||||||| ||||| ||| |||    
T  30141336 atttgcatccgtgacgaagggagagttttcgtgttggctagaacaattagttttattggtgtctatccggttgacattggggaagctttgggcctttacc 30141237  T
Q  111 ttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacat 210  Q
     ||| || ||||||| ||  ||||||||||||||||| || |||||| ||||||||||||||| ||||||||||| | |||| |||||||||||||||||    
T  30141236 atgcgcttcaatgggcgagcgatatgcaccttgataacattgattttaaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacat 30141137  T
Q  211 aac 213  Q
    |||    
T  30141136 aac 30141134  T

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Target: scaffold1964 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 852 - 1076
Alignment:
Q  8 ggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttc 107  Q
    ||||||| ||| | ||| |||| ||||||||||||||||||||||||| |||  || | || ||| ||||||||||| || || ||||| ||  | |||     
T  852 ggcattttcattcttgacgaagatggagtctttgttttggctagaacagtcacctt-attgatgtatatccggttgacataggtgaagctttaagccttt 950  T
Q  108 accttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaaga 207  Q
    ||| ||| || |||| || || |||||||||| | |||||||| ||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||    
T  951 accatgcgcttcaatcggcgagtgatatgcacttagataatattgattttgaagtcgactccaaaaccacaaaagacgctctttactcgggtcgggaaga 1050  T
Q  208 cataactgaagtcggtaacattatca 233  Q
    |||||||||| | || ||||||||||    
T  1051 cataactgaatttggcaacattatca 1076  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 47747303 - 47747512
Alignment:
Q  8 ggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttc 107  Q
    ||||||||||| | |||  ||| ||||||||||||||||||||||||| |||  |||  |||||| || ||| |||| || || ||||| || || |||     
T  47747303 ggcatttgcattcgtgactaagatggagtctttgttttggctagaacagtcacctttgttggtgtatacccgattgacataggtgaagctttaggccttt 47747402  T
Q  108 accttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaaga 207  Q
    ||| |||  | ||||||| || |||||||||| | |||||| | ||||||||||||||||| |||| ||||||||| ||| |||||||| ||||||||||    
T  47747403 accatgcgattcaatgggcgagtgatatgcacttagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaaga 47747502  T
Q  208 cataactgaa 217  Q
    ||||||||||    
T  47747503 cataactgaa 47747512  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 47726030 - 47726206
Alignment:
Q  41 gttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcacc 140  Q
    ||||||||||||||| |||  |||  |||||| || ||| |||| || || ||||| || || ||| ||| |||  | ||||||| || ||||||||||     
T  47726030 gttttggctagaacagtcacctttgttggtgtatacccgattgacataggtgaagctttaggcctttaccatgcgattcaatgggcgagtgatatgcact 47726129  T
Q  141 ttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacataactgaa 217  Q
    | |||||| | ||||||||||||||||| |||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  47726130 tagataattttgattttgaagtcgactccaaaaccacaaaagacgctctttactcgagtcgggaagacataactgaa 47726206  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 6949681 - 6949836
Alignment:
Q  8 ggcatttgcatccatgatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttc 107  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||| |||  |||| |||||| ||||| ||||| |  || ||||  || || |||     
T  6949681 ggcatttgcatccgtgacgaagatggagtctttgttttggctagaacaatcacctttattggtgtatatcctgttgacaaaggtgaagttttaggccttt 6949780  T
Q  108 accttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtc 163  Q
    ||| ||| || ||||||| || |||||||||| | |||||||| ||||||||||||    
T  6949781 accatgcgcttcaatgggcgagtgatatgcacttagataatattgattttgaagtc 6949836  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 2002923 - 2002735
Alignment:
Q  23 gatgaaggtggagtctttgttttggctagaacattcaattttaatggtgtgtatccggttgatattggggaagcattgggtcttcaccttgctctccaat 122  Q
    |||||||| ||||| ||||| ||||||| |||  | | || || ||| || ||| ||||||| || || ||| | |||||||| || || ||| | || |    
T  2002923 gatgaaggaggagtgtttgtattggctaaaactataagttatattggcgtttattcggttgacataggtgaaactttgggtctccatctcgctttgcagt 2002824  T
Q  123 gggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctatttactcgggtcgggaagacata 211  Q
    ||||||  |||||||| ||||| || || |||||||| ||||||||||||| |||||| || |  |||||||| || ||||||||||||    
T  2002823 gggtgagcgatatgcagcttgacaacatagattttgaggtcgactctaaaaccacaaaggacggaatttactccggacgggaagacata 2002735  T

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Target: scaffold0643 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 868 - 980
Alignment:
Q  90 gggaagcattgggtcttcaccttgctctccaatgggtgaatgatatgcaccttgataatatggattttgaagtcgactctaaaatcacaaaagatgctat 189  Q
    ||||||| ||||| ||| ||| ||| || ||||||| ||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||| | | |    
T  868 gggaagctttgggactttaccatgcgcttcaatgggcgagcgatatgcaccttgataatattgattttgaagtcgactctaaaaccacaaaagacgttct 967  T
Q  190 ttactcgggtcgg 202  Q
    ||| |||||||||    
T  968 ttattcgggtcgg 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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