View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_55 (Length: 240)
Name: NF11089_high_55
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4365624 - 4365401
Alignment:
| Q |
1 |
ttgaatgtgtgatttttcctggattaattacttggagttttgatacgagaccaactgcatctccttcgtatgttaattggttatctccaataaattctac |
100 |
Q |
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| T |
4365624 |
ttgaatgtgtgatttttcctggattaattacttggagttttgatacgagaccaactgcatctccttcgtatgttaattggttatctccaataaattctac |
4365525 |
T |
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| Q |
101 |
agaaatgtttgatttcattttacatatcattcatggttttaattgaaggatagttttgcagaaattttttgtttggtactgttatagtattctatatata |
200 |
Q |
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| T |
4365524 |
agaaatgtttgatttcattttacatatcattcatggttttaattgaaggatagttttgcagaaattttttgtttggtactgttatagtattctatatata |
4365425 |
T |
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| Q |
201 |
gttttatgttttatacctttctat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4365424 |
gttttatgttttatacctttctat |
4365401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 33652513 - 33652350
Alignment:
| Q |
49 |
gaccaactgcatctccttcgtatgttaattggttatctccaataaattctacagaaatgtttgatttcattttacatatcattcatggttttaattgaag |
148 |
Q |
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|||||| |||||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| | |
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| T |
33652513 |
gaccaattgcatcgccttcgtatgctaattggttatctctagtaaattctacaaaaatgtttgatttcgtttta-atatcattcatggttttaactgatg |
33652415 |
T |
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| Q |
149 |
gatagttttgcagaaattttttgtttggtactgttatagtattctatatatagttttatgttttat |
214 |
Q |
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| T |
33652414 |
gatagttttgcagaaa-attctggttggtactattttagtattccatgtttattttcatgttttat |
33652350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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