View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11089_high_7 (Length: 543)
Name: NF11089_high_7
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 6059940 - 6060453
Alignment:
| Q |
17 |
aaaacatgcatggtttgcaaacactaaccaacaatcttcattcgacaactgattcagcctataagtttgaaccgtttggactacagaggcaaccttttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6059940 |
aaaacatgcatggtttgcaaacactaaccaacaatcttcattcgacaactgatttagcctataagtttgaaccgtttggactacagaggcaaccttttca |
6060039 |
T |
|
| Q |
117 |
ctgcgagttgttataagaattttacttcccttaatcccacgttgaaaaggttttataagacgatcccaattgacataatcctcaatccaaacatcatcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6060040 |
ctgcgagttgttataagaattttacttcccttaatcccacgttgaaaaggttttataagaagatcccaattgacataatcctcaatccaaacatcatcca |
6060139 |
T |
|
| Q |
217 |
aaacaacaaagaatttcttttctttcaacatatcttgcaaatcaagttgaagtaaatttagatcattcatttcacaagttcttcttgtaattgcttgtgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6060140 |
aaacaacaaagaatttcttttctttcaacatatcttgcaaatcaagttgaagtaaatttagatcattcatttcacaagttcttcttgtaattgcttgtgt |
6060239 |
T |
|
| Q |
317 |
tataatctttgtaaccctcaaaatgtcaaactcttcagaaacacaaacccaagctttaaaatcaaatacatgcttcaaatactcgtcattgtacaccaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6060240 |
tataatctttgtaaccctcaaaatgtcaaactcttcagaaacacaaacccaagctttaaaatcaaatacatgcttcaaatactcatcattgtacaccaac |
6060339 |
T |
|
| Q |
417 |
tgagctaaagtagtttttcctacccctcccattcccacaataggtatcacaatcacttcttcaccatcatcactgttatcatctaacaaaaacttgatga |
516 |
Q |
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| T |
6060340 |
tgagctaaagtagtttttcctacccctcccattcccacaataggtatcacaatcacttcttcaccattatcactgttatcatctaacaaaaacttgatga |
6060439 |
T |
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| Q |
517 |
tgccctccttgtct |
530 |
Q |
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|||||||||||||| |
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| T |
6060440 |
tgccctccttgtct |
6060453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 34802690 - 34802803
Alignment:
| Q |
123 |
gttgttataagaattttacttcccttaatcccacgttgaaaaggttttataagacgatcccaattgacataatcctcaatccaaacatcatccaaaacaa |
222 |
Q |
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||||||| ||||||||||||||| ||| | || | ||||||||| |||||||| || |||| || ||||||||||| |||| ||||||||||| |||| |
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| T |
34802690 |
gttgttacaagaattttacttcctttagttccgcattgaaaaggccttataagaatattccaactgtcataatcctcagtccagacatcatccaatacaa |
34802789 |
T |
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| Q |
223 |
caaagaatttcttt |
236 |
Q |
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||||| |||||| |
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| T |
34802790 |
ttaagaacttcttt |
34802803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 4246855 - 4246819
Alignment:
| Q |
21 |
catgcatggtttgcaaacactaaccaacaatcttcat |
57 |
Q |
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| T |
4246855 |
catgcatggattgcaaacactgaccaacaatcttcat |
4246819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 4253974 - 4253938
Alignment:
| Q |
21 |
catgcatggtttgcaaacactaaccaacaatcttcat |
57 |
Q |
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| T |
4253974 |
catgcatggtttgcaaacaccgaccaacaatcttcat |
4253938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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