View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11089_low_11 (Length: 500)
Name: NF11089_low_11
Description: NF11089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11089_low_11 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 142504 - 142192
Alignment:
| Q |
1 |
caaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
142504 |
caaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtgaaaaggacctattgagataaactttggtgtataagcat |
142405 |
T |
|
| Q |
101 |
cttcattcaacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142404 |
cttcattcaacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaat |
142305 |
T |
|
| Q |
201 |
ttgtggtatagtttcagaactcatagtaacacgaatttctcttccnnnnnnnacctacaggaatcaaattaaacataatcattagcaatatattacatta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142304 |
ttgtggtatagtttcagaactcatagtaacacgaatttctcttcctttttttacctataggaatcaaattaaacataatcattagcaatatattacatta |
142205 |
T |
|
| Q |
301 |
tagtaacacagat |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
142204 |
tagtaacacagat |
142192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 142105 - 142050
Alignment:
| Q |
400 |
tacattaaaataaattactagcaatatatattaccttctagcaagatttcccagtt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
142105 |
tacattaaaataaattactagcaatatatattaccttctagcaagatttcacagtt |
142050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 45961168 - 45961367
Alignment:
| Q |
1 |
caaaatgcatgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcat |
100 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45961168 |
caaaatgcatgaaagtagctttgtttttgtttctcttgatttacttctggattatgactgtgaaaaggacctattgagataaactttggtgtataagcat |
45961267 |
T |
|
| Q |
101 |
cttcattcaacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
45961268 |
cttcattcaacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgctttctggaatgatgattatgtgctgaat |
45961367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 292669 - 292471
Alignment:
| Q |
9 |
atgaaaatacctttgtttctgtttctcttgatttagttgtggattttgactgtaaaaaggacctattgagataaactgtggtgtataagcatcttcattc |
108 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||| || || ||||||| || |||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
292669 |
atgaaagtacttttgtttctgtttctcttgatttagttcagggttatgactgtgaagaggacctattgagataaactttggtgtgtaagcatcttcattc |
292570 |
T |
|
| Q |
109 |
aacttcagaacatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatttctggaatgttgattatgtgctgaatttgtggt |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
292569 |
aacttcagaagatggtgaggaaccttgtaaatgcaacatttttcatgtaacataggttcaatgatctctggaatgttgattatgtgctgaatctgtggt |
292471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University